CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0066g01590.t01	Wine grape	golgi	60.45	64.54
KRH74622	Soybean	plasma membrane	53.73	56.8
PGSC0003DMT400001332	Potato	golgi	52.8	56.26
Solyc02g087010.2.1	Tomato	golgi	52.61	55.62
KRG99307	Soybean	golgi	51.31	54.78
KRH69528	Soybean	vacuole	51.12	53.83
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	49.63	52.36
TraesCS6B01G322100.1	Wheat	plasma membrane	47.95	51.2
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	46.08	51.14
KRH45706	Soybean	plasma membrane	39.93	50.83
TraesCS6A01G291600.1	Wheat	plasma membrane	47.57	50.8
TraesCS6D01G272900.2	Wheat	plasma membrane	47.39	50.6
HORVU6Hr1G072950.14	Barley	golgi	47.95	49.9
Zm00001d017926_P003	Maize	golgi	47.39	49.8
AT5G14890.1	Thale cress	plasma membrane	44.78	49.79
Os06t0269300-01	Rice	mitochondrion	47.95	49.71
CDX69553	Canola	plasma membrane	42.72	49.46
EES07314	Sorghum	golgi, plasma membrane, vacuole	47.57	49.23
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	46.64	48.45
CDY09894	Canola	golgi, plasma membrane	41.6	48.16
Bra008732.1-P	Field mustard	plasma membrane	41.6	48.16
EER89586	Sorghum	golgi, plasma membrane	45.52	48.13
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	45.52	48.03
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	44.59	47.51
Zm00001d045703_P002	Maize	plasma membrane	44.03	46.64
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	46.64	44.41
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	46.27	44.36
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	45.71	42.98
HORVU7Hr1G042740.2	Barley	plastid	46.64	37.31
KRH21938	Soybean	vacuole	29.66	31.61
KRH27368	Soybean	plastid	22.01	27.51
KRH45709	Soybean	endoplasmic reticulum	17.35	23.25

Protein Annotations

EMBL:ACUP02011549	EnsemblPlants:KRG93349	EnsemblPlantsGene:GLYMA_19G011000	EntrezGene:100793916	Gene3D:2.120.10.30	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	ncoils:Coil	PANTHER:PTHR13833
PANTHER:PTHR13833:SF57	ProteinID:KRG93349	ProteinID:KRG93349.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898
TMHMM:TMhelix	UniParc:UPI00023D8781	UniProt:I1N5U6	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr19:+:1055394..1060028

Molecular Weight (calculated)

60474.3 Da

IEP (calculated)

7.573

GRAVY (calculated)

-0.638

Length

536 amino acids

Sequence
(BLAST)

001: MSKSCSVLLF GFVLVLCLFS PTSATPPPAK VVTGVVSNVV SALIKWLWSL SVKSTTKPGR VQHSRSMVKF ESGYSVETIF DGSQLGIEPH SVKISPNGEF
101: LVLDSENSNI YKVSGSMSRY SRPKLLAGSA EGNIGHIDGR PREARMNHPK GLTVDDRGNI YIADTLNMAI RKISDEGVTT IAGGKRGYAG GHVDGPSEDA
201: KFSNDFDVVY VGSSCSLLVV DRGNHAIREI QLHQDDCTSY DEDDNSFNLG IVVLVAAAFF GYMLALLQWR VRAMFSSPDD PRAPSRKKGA PFVAQQMQRP
301: PPTTKSVRPP LIPNEDEFEK QDEGFFVSLG RLFLNSGTCM SEILGGLFSG SKRKSLQYHQ YQQQYQYANR YPNAWPMQES FVIPDEDEPP PSLETKTPTP
401: RETYPIMTKE LEKPQHFKPS RGYLKRWEGG DYQEQHQQLQ QHHQQHQQEH PKLQHQQHQQ QVKLQHQHQV HTRYSSTPQG YYEQNCETNE IVFGAVQEHD
501: GRREAMVIKA VDYGDPKYTH HNIRPRLNYV GYSHGY

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.