Factsheet for PGSC0003DMT400001332

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087010.2.1	Tomato	golgi	97.42	96.65
VIT_14s0066g01590.t01	Wine grape	golgi	64.41	64.54
TraesCS6A01G291600.1	Wheat	plasma membrane	53.28	53.39
PGSC0003DMT400010531	Potato	golgi	53.28	52.96
KRG93349	Soybean	golgi, plasma membrane, vacuole	56.26	52.8
TraesCS6D01G272900.2	Wheat	plasma membrane	52.68	52.79
TraesCS6B01G322100.1	Wheat	plasma membrane	52.68	52.79
HORVU6Hr1G072950.14	Barley	golgi	53.28	52.04
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	52.29	51.77
Zm00001d017926_P003	Maize	golgi	51.49	50.78
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	52.09	50.78
EES07314	Sorghum	golgi, plasma membrane, vacuole	52.09	50.58
CDX69553	Canola	plasma membrane	46.32	50.32
Os06t0269300-01	Rice	mitochondrion	50.7	49.32
Bra008732.1-P	Field mustard	plasma membrane	45.13	49.03
CDY09894	Canola	golgi, plasma membrane	45.13	49.03
AT5G14890.1	Thale cress	plasma membrane	46.92	48.96
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	48.51	48.51
EER89586	Sorghum	golgi, plasma membrane	48.11	47.73
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	45.13	47.0
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	47.32	46.85
Zm00001d045703_P002	Maize	plasma membrane	46.32	46.05
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	49.11	44.19
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	49.11	43.87
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	49.3	43.51
HORVU7Hr1G042740.2	Barley	plastid	49.9	37.46
PGSC0003DMT400018285	Potato	endoplasmic reticulum	28.23	29.65
PGSC0003DMT400010568	Potato	extracellular	18.69	23.44

Protein Annotations

EntrezGene:102585981	Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011042	UniProt:M0ZIA9
InterPro:NHL_repeat	PFAM:PF01436	EnsemblPlantsGene:PGSC0003DMG400000502	PGSC:PGSC0003DMG400000502	EnsemblPlants:PGSC0003DMT400001332	PANTHER:PTHR13833
PANTHER:PTHR13833:SF57	SUPFAM:SSF101898	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295FA5C	RefSeq:XP_006338544.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000502]

Coordinates

chr2:-:46893212..46897662

Molecular Weight (calculated)

56419.2 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.504

Length

503 amino acids

Sequence
(BLAST)

001: MKRNWVVLFL VVFLLLIEFS SASATPAAKI VGGVVANVAS VMFKWAWSLK STTKTAVSSR SMIKFESGYV VETVFDGSKM GIEPYSVEVS STGEVLILDS
101: ENSNVYRVST PLSRYSRPKL VAGSPEGYSG HVDGRLREAR MDHPKGIAMD DQGNIYVADT MNMAIRKISD AGVVTIAGGK SARGGGHLDG PSEDAQFSDD
201: FDVVFVGSSC SLLVIDRGNQ AIREIQLNDD DCSHQYDDNN LQLGVALLCA AVFFGYMLAL LQRRIGALFS SNSDDQRAPV RGMQHAPYQR NMKSVRPPII
301: PSEDEYEKQD ENLFLSLGRL VMNTGSTVVE IFGGMFSGFR KNPYPHHVQQ HYHYNHKQSS TWPVQESYVI RDEDEAPPLD TRDPTPRKTY PIMNKDPEKP
401: RHIRQSQAHY VGWNGNAAHG HGNFQQQQQF LPQVYQHHDK HQSSSPQTYY EESCETKEIV FGAVQEQDGR RETVVIKAVD YGDPAYNNHN VRSRYNYSTR
501: YSF

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.