Factsheet for VIT_14s0066g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g00330.t01	Wine grape	plasma membrane	65.14	66.6
PGSC0003DMT400001332	Potato	golgi	64.54	64.41
Solyc02g087010.2.1	Tomato	golgi	64.74	64.1
VIT_13s0106g00480.t01	Wine grape	cytosol	8.96	60.81
KRG93349	Soybean	golgi, plasma membrane, vacuole	64.54	60.45
TraesCS6A01G291600.1	Wheat	plasma membrane	54.78	54.78
TraesCS6D01G272900.2	Wheat	plasma membrane	54.38	54.38
TraesCS6B01G322100.1	Wheat	plasma membrane	54.38	54.38
CDX69553	Canola	plasma membrane	50.0	54.21
HORVU6Hr1G072950.14	Barley	golgi	55.38	53.98
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	54.38	53.74
Os06t0269300-01	Rice	mitochondrion	54.78	53.19
AT5G14890.1	Thale cress	plasma membrane	51.0	53.11
VIT_13s0106g00460.t01	Wine grape	cytosol	15.54	52.7
CDY09894	Canola	golgi, plasma membrane	48.21	52.27
Bra008732.1-P	Field mustard	plasma membrane	48.01	52.05
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	53.39	51.94
Zm00001d017926_P003	Maize	golgi	52.59	51.76
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	49.8	51.76
EES07314	Sorghum	golgi, plasma membrane, vacuole	52.99	51.35
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	51.2	51.09
EER89586	Sorghum	golgi, plasma membrane	51.0	50.49
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	49.6	49.02
Zm00001d045703_P002	Maize	plasma membrane	48.8	48.42
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	51.59	46.0
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	50.8	45.62
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	51.39	45.26
HORVU7Hr1G042740.2	Barley	plastid	52.39	39.25
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	31.47	32.64
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	20.92	23.97

Protein Annotations

EntrezGene:100266244	wikigene:100266244	Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	ProteinID:CCB58531
ProteinID:CCB58531.1	ncoils:Coil	UniProt:F6HV13	EMBL:FN596252	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR011042	EntrezGene:LOC100266244	wikigene:LOC100266244	PANTHER:PTHR13833	PANTHER:PTHR13833:SF57
SUPFAM:SSF101898	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000210996B	ArrayExpress:VIT_14s0066g01590	EnsemblPlantsGene:VIT_14s0066g01590
EnsemblPlants:VIT_14s0066g01590.t01	RefSeq:XP_002274991	RefSeq:XP_002274991.1	RefSeq:XP_010660944.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:27959205..27962651

Molecular Weight (calculated)

56245.3 Da

IEP (calculated)

7.487

GRAVY (calculated)

-0.533

Length

502 amino acids

Sequence
(BLAST)

001: MRNNWVGLFL ILVVFGGFSS VSASPPVAKI VSGIVSNVVS ALVKWLWSLK STTNTAISSR SKMNFEDGYT VETVFDGSKL GIEPYSLEVS TSGELLVLDS
101: ENSNIYKISS PLSRYSRPKL VAGSPDGYSG HVDGKLREAR MNHPKGLTMD ERGNIYIADT MNMAIRKISD AGVTTIAGGK WGRGGGHVDG PSEDAKFSND
201: FDVVYIGSSC SLLVIDRGNQ AIREIQLHYE DCAYQYNGSF HLGIAVLVAA GFFGYMLALL QRRVAAMFSS QYDSSTPMKK GMPPESYQRP LKSVRAPLIP
301: TEDEYEKADE GFFGSLGRLF LNTGSTLAEI FGGLFSGSRK KPPHQQIQQQ YGQPNVHSNG WPMQESYVIP DEDEPPSIES RAPTPKKTYP FMTPEMEKTH
401: HFRQSRTFYS NGWDGNYQQL QQKQIQQKQQ YQQHHQKHYS SNPQTYYEQS CETKNEIVFG AVQEQDGRRE AMVIKAVDYG DPVYNHHNIR PRLNYMGYSH
501: AY

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.