Factsheet for VIT_19s0014g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 6
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00480.t01	Wine grape	cytosol	13.64	89.19
VIT_13s0106g00460.t01	Wine grape	cytosol	26.86	87.84
Solyc07g062300.2.1	Tomato	plasma membrane	57.85	58.46
GSMUA_Achr7P13840_001	Banana	golgi	57.02	57.86
PGSC0003DMT400018285	Potato	endoplasmic reticulum	57.02	57.62
KRH21938	Soybean	vacuole	59.3	57.06
CDX82461	Canola	endoplasmic reticulum	52.27	51.53
KRH27368	Soybean	plastid	45.25	51.05
Bra001570.1-P	Field mustard	plastid	51.86	50.91
CDX75794	Canola	plastid	51.24	50.3
AT3G14860.2	Thale cress	plastid, vacuole	51.03	50.1
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	50.21	49.29
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	48.55	47.67
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	48.14	47.26
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	47.93	47.06
OQU84683	Sorghum	golgi	47.73	46.67
Zm00001d016228_P001	Maize	plasma membrane	47.52	44.66
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	47.31	43.29
VIT_01s0026g00330.t01	Wine grape	plasma membrane	32.64	32.18
VIT_14s0066g01590.t01	Wine grape	golgi	32.64	31.47
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	20.45	22.6

Protein Annotations

EntrezGene:100245328	wikigene:100245328	Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	ProteinID:CBI20171
ProteinID:CBI20171.3	UniProt:E0CS72	EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011042	EntrezGene:LOC100245328	wikigene:LOC100245328	InterPro:NHL_repeat	PFAM:PF01436	PANTHER:PTHR13833
PANTHER:PTHR13833:SF73	SUPFAM:SSF63829	SignalP:SignalP-noTM	TIGR:TC53947	TMHMM:TMhelix	UniParc:UPI00015C764E
ArrayExpress:VIT_19s0014g01010	EnsemblPlantsGene:VIT_19s0014g01010	EnsemblPlants:VIT_19s0014g01010.t01	unigene:Vvi.1873	RefSeq:XP_002285515	RefSeq:XP_002285515.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:1054213..1059737

Molecular Weight (calculated)

53745.5 Da

IEP (calculated)

8.101

GRAVY (calculated)

-0.489

Length

484 amino acids

Sequence
(BLAST)

001: MKKSLLFLII LTLVFTFSLQ FRAQAAPPLG PFVRHFSSLL KWTRSSSKAP HSDGHVLQFE DGYLVETVVE GNELGVVPHS IRVSEDGELF AVDAVKNNIV
101: RITPPLSQYS RARLVAGSFQ GHTGHVDGKP SDARFNGPKG VTMDDKGNVY VADTSNLAIR KIGDSGVTTI AGGKSNVAGY RDGPSEDAKF SSDFDVVYVR
201: PTCSLLVVDR GNAALRQISL NQEDCDYQNS SISATDIFMV IGAVMVGYAS CLLQKGFGPS AFSKTQHSES EFEDQLIKEK PTPIVESIKE EPDAGWPSFG
301: QLIIDLSKFT LEALTGIFLY FIPSRFMPTR ARKGLTPLKD HLIMPEDEAD PPLAQKQRAP PPLSETRQAH TPNTSEKYSE MKPPKIKSYS FKDPSLSSKH
401: RSSKRQEYAE FYHSGEVPPP YTQVRSKSQK ERSRHRQRDK SGEMFGAVGA ESKPVEIKAV DYDDPKFDHY NIRSKYGSDD SFRF

Best Arabidopsis Sequence Match ( AT3G14860.1 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.