Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.13 | 95.13 |
| TraesCS6A01G194600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 94.12 | 94.12 |
| HORVU6Hr1G045970.15 | Barley | endoplasmic reticulum, plasma membrane | 90.87 | 84.69 |
| Os02t0234200-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 78.3 | 78.3 |
| VIT_13s0106g00480.t01 | Wine grape | cytosol | 11.16 | 74.32 |
| VIT_13s0106g00460.t01 | Wine grape | cytosol | 20.28 | 67.57 |
| OQU84683 | Sorghum | golgi | 66.53 | 66.26 |
| Zm00001d016228_P001 | Maize | plasma membrane | 65.72 | 62.91 |
| GSMUA_Achr7P13840_001 | Banana | golgi | 57.81 | 59.75 |
| VIT_19s0014g01010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 47.67 | 48.55 |
| KRH21938 | Soybean | vacuole | 48.07 | 47.12 |
| Solyc07g062300.2.1 | Tomato | plasma membrane | 44.83 | 46.14 |
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 44.22 | 45.51 |
| Bra001570.1-P | Field mustard | plastid | 44.62 | 44.62 |
| CDX82461 | Canola | endoplasmic reticulum | 43.81 | 43.99 |
| KRH27368 | Soybean | plastid | 37.53 | 43.12 |
| CDX75794 | Canola | plastid | 42.8 | 42.8 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 41.18 | 41.18 |
| TraesCS6B01G322100.1 | Wheat | plasma membrane | 29.82 | 29.28 |
| TraesCS7B01G116500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 28.8 | 25.22 |
| TraesCS2B01G153900.1 | Wheat | extracellular, plasma membrane, vacuole | 17.85 | 21.89 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G235400.1 | EnsemblPlantsGene:TraesCS6B01G235400 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:NHL_repeat | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF73 | PFAM:PF01436 |
| SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF101898 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6B:+:399761441..399770917
Molecular Weight (calculated)
53570.5 Da
IEP (calculated)
8.541
GRAVY (calculated)
-0.366
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLGSMPVLS LFVNALLLFV VLQFDANAFA TPTDNIVRQL SSVVKWPRGS PPHSPEQSSH PQYDGNVAVQ FESGYFVETL VEGDKLGVTP HTIRVSPVEG
101: GELLAVDSAH SNIVRITPPL SEYSRGRLVA GSFQGHAGHI DGKPIDARFK RPTGVAVDDT GNVYIADTAN LAIRKIGESG VTTIAGGKSN IPGYRDGPSE
201: DAKFSTDFDV VYVKKMCSLL VIDRGNAALR KIVLPQENCT YQDAAFLSSD IVLVIGAVVA GYLFSVVQHG FGSSTSEKIE ASEDGKQESS TAGKPPLVVE
301: SLKEEPSAGW PSFGTLVADL LKLAVEGVGN LVLNIAPLRM QRVKKKTGLT PLKDRLVMPE DREENPVAQK LSSTPMITET LHAPSAANET VAKAHKSIKS
401: SKFRDSTLSS KHRSTKRQEY AEFYGSTETP QASAKVPKDR LRHRHREKSG EVTYGTGHPE PKPLEMKAAD YSDPKYDHYN MRSKYGADSG FRY
101: GELLAVDSAH SNIVRITPPL SEYSRGRLVA GSFQGHAGHI DGKPIDARFK RPTGVAVDDT GNVYIADTAN LAIRKIGESG VTTIAGGKSN IPGYRDGPSE
201: DAKFSTDFDV VYVKKMCSLL VIDRGNAALR KIVLPQENCT YQDAAFLSSD IVLVIGAVVA GYLFSVVQHG FGSSTSEKIE ASEDGKQESS TAGKPPLVVE
301: SLKEEPSAGW PSFGTLVADL LKLAVEGVGN LVLNIAPLRM QRVKKKTGLT PLKDRLVMPE DREENPVAQK LSSTPMITET LHAPSAANET VAKAHKSIKS
401: SKFRDSTLSS KHRSTKRQEY AEFYGSTETP QASAKVPKDR LRHRHREKSG EVTYGTGHPE PKPLEMKAAD YSDPKYDHYN MRSKYGADSG FRY
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.