Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G235400.1 | Wheat | endoplasmic reticulum | 84.69 | 90.87 |
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.8 | 88.84 |
| TraesCS6A01G194600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.23 | 88.24 |
| Os02t0234200-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 74.1 | 79.51 |
| VIT_13s0106g00480.t01 | Wine grape | cytosol | 10.4 | 74.32 |
| VIT_13s0106g00460.t01 | Wine grape | cytosol | 18.9 | 67.57 |
| OQU84683 | Sorghum | golgi | 61.81 | 66.06 |
| Zm00001d016228_P001 | Maize | plasma membrane | 62.19 | 63.88 |
| GSMUA_Achr7P13840_001 | Banana | golgi | 53.69 | 59.54 |
| VIT_19s0014g01010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 43.29 | 47.31 |
| KRH21938 | Soybean | vacuole | 43.48 | 45.73 |
| Solyc07g062300.2.1 | Tomato | plasma membrane | 40.83 | 45.09 |
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 40.08 | 44.26 |
| Bra001570.1-P | Field mustard | plastid | 41.02 | 44.02 |
| CDX82461 | Canola | endoplasmic reticulum | 40.64 | 43.79 |
| KRH27368 | Soybean | plastid | 34.4 | 42.42 |
| CDX75794 | Canola | plastid | 39.51 | 42.39 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 37.81 | 40.57 |
| HORVU6Hr1G072950.14 | Barley | golgi | 28.54 | 29.32 |
| HORVU7Hr1G042740.2 | Barley | plastid | 28.92 | 22.84 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G045970.15 | EnsemblPlantsGene:HORVU6Hr1G045970 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:NHL_repeat |
| PANTHER:PTHR13833 | PANTHER:PTHR13833:SF73 | PFAM:PF01436 | SEG:seg | SUPFAM:SSF101898 | TMHMM:TMhelix |
| UniParc:UPI000B4662CA | UniProt:A0A287U3I2 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:267736508..267836425
Molecular Weight (calculated)
57182.1 Da
IEP (calculated)
8.654
GRAVY (calculated)
-0.276
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: KMGVDSLKLL FASPFFLPAL TRGSPEAAAP PKILAMRLGS MPVLSLLVIA LLLCVVLQSD ANAFATPTDN IVRQLSSVVK WPRGSPPHSP KQSSHPQYDG
101: NVAVQFESGY FVETLVEGDK LGVTPHTIRV SQVEGGELLA VDSTHSNIVR ITPPLSEYSR GRLVAGSFQG HAGHIDGKPI DARFKRPTGV AVDDTGNVYI
201: ADTANLAIRK IGESGVTTIA GGKSNIPGYT DGPSEDAKFS TDFDVVYVKK MCSLLVIDRG NAALRKIVLP QEDCTYQDAT LLSSADIILV IGAVVAGYLF
301: SVAQHGFGSS TSEKIEASED DKQESSTVGK PTLVVESLKE ESSAGWPSFG TLVSDLLKLA VEGVGNLVLS IAPLRMQHVK RKTGLTPLKD RLVIPEGREE
401: TPVAQKLSST PMITETLHAP SAANETVAKA QKSIKSSKFR DSTLSSKHRT TKRQEYAEFY GSTETPQASV KVPKDRLRHR HREKSGEVTY GTAHPEPRPS
501: EMKAADYSDL KYDHYNMRSK YGADSGFRY
101: NVAVQFESGY FVETLVEGDK LGVTPHTIRV SQVEGGELLA VDSTHSNIVR ITPPLSEYSR GRLVAGSFQG HAGHIDGKPI DARFKRPTGV AVDDTGNVYI
201: ADTANLAIRK IGESGVTTIA GGKSNIPGYT DGPSEDAKFS TDFDVVYVKK MCSLLVIDRG NAALRKIVLP QEDCTYQDAT LLSSADIILV IGAVVAGYLF
301: SVAQHGFGSS TSEKIEASED DKQESSTVGK PTLVVESLKE ESSAGWPSFG TLVSDLLKLA VEGVGNLVLS IAPLRMQHVK RKTGLTPLKD RLVIPEGREE
401: TPVAQKLSST PMITETLHAP SAANETVAKA QKSIKSSKFR DSTLSSKHRT TKRQEYAEFY GSTETPQASV KVPKDRLRHR HREKSGEVTY GTAHPEPRPS
501: EMKAADYSDL KYDHYNMRSK YGADSGFRY
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.