Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82461 | Canola | endoplasmic reticulum | 87.83 | 88.19 |
| VIT_13s0106g00480.t01 | Wine grape | cytosol | 12.58 | 83.78 |
| VIT_13s0106g00460.t01 | Wine grape | cytosol | 21.5 | 71.62 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 67.55 | 67.55 |
| VIT_19s0014g01010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 50.3 | 51.24 |
| Solyc07g062300.2.1 | Tomato | plasma membrane | 49.29 | 50.73 |
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 48.88 | 50.31 |
| KRH21938 | Soybean | vacuole | 51.32 | 50.3 |
| KRH27368 | Soybean | plastid | 41.38 | 47.55 |
| GSMUA_Achr7P13840_001 | Banana | golgi | 45.23 | 46.75 |
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 43.0 | 43.0 |
| TraesCS6B01G235400.1 | Wheat | endoplasmic reticulum | 42.8 | 42.8 |
| Os02t0234200-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 42.8 | 42.8 |
| TraesCS6A01G194600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 42.19 | 42.19 |
| OQU84683 | Sorghum | golgi | 41.58 | 41.41 |
| Zm00001d016228_P001 | Maize | plasma membrane | 42.6 | 40.78 |
| HORVU6Hr1G045970.15 | Barley | endoplasmic reticulum, plasma membrane | 42.39 | 39.51 |
| CDY47648 | Canola | extracellular | 18.26 | 34.48 |
| CDY11605 | Canola | endoplasmic reticulum, plasma membrane | 30.83 | 31.28 |
| CDX68347 | Canola | endoplasmic reticulum, plasma membrane | 30.83 | 31.15 |
| CDY38803 | Canola | plasma membrane, vacuole | 31.44 | 30.45 |
| CDY23504 | Canola | plasma membrane | 30.43 | 30.36 |
| CDY59085 | Canola | plasma membrane | 29.21 | 30.32 |
| CDY47647 | Canola | plasma membrane | 29.41 | 30.08 |
| CDY09894 | Canola | golgi, plasma membrane | 26.57 | 28.29 |
| CDX69553 | Canola | plasma membrane | 26.37 | 28.08 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 9.94 | 27.68 |
| CDY59087 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 20.89 | 27.61 |
Protein Annotations
| EnsemblPlants:CDX75794 | EnsemblPlantsGene:GSBRNA2T00123747001 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:NHL_repeat | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF73 | PFAM:PF01436 |
| ProteinID:CDX75794 | ProteinID:CDX75794.1 | SEG:seg | SignalP:SignalP-TM | SUPFAM:SSF101898 | TMHMM:TMhelix |
| UniParc:UPI0004EE6FD1 | MapMan:35.2 | : | : | : | : |
Description
BnaC03g38770D
Coordinates
chrLK031805:-:756226..758703
Molecular Weight (calculated)
54521.0 Da
IEP (calculated)
8.316
GRAVY (calculated)
-0.542
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESQILSFS WSFKIMFTLS IVFFTLLHSF PLQAQAAPPA GSLIKHMSSV LKWTTGSSSK TSSQSETANV VQFENGYLVE TVVEGNEIGA LPYKIRVSDD
101: GELYAVDEVN SNIIKITPPL SHYSRGRLVA GSFQGKTGHA DGKPNEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN VAGFRDGPSE
201: DAKFSNDFDL VYVRPTCSLL VIDRGNAALR QISLAEEDCE YHSSSISLTD ILLVIGAVVI GYATCLLQQG FGHSFVSKTS ETSFEEEQQP GKEKLSRPVL
301: ETTTTAAKEE PGWPSFGQLL IDLCKLSLEF FTSNLVPARF KTSSNLRPLK DRLKMPEDEQ EPTLVQRHTA PAPISESRHA HLPKQSDTYP EHKPSKTRSS
401: SATKDPSSKH HRSSSSKRQE YAQFYASGEV VQPPKVHKER SRRRHRDKTT TETEPKTTTA SDTVKPVEYS NSSKFDHFNM RSSKYGPETP FRF
101: GELYAVDEVN SNIIKITPPL SHYSRGRLVA GSFQGKTGHA DGKPNEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN VAGFRDGPSE
201: DAKFSNDFDL VYVRPTCSLL VIDRGNAALR QISLAEEDCE YHSSSISLTD ILLVIGAVVI GYATCLLQQG FGHSFVSKTS ETSFEEEQQP GKEKLSRPVL
301: ETTTTAAKEE PGWPSFGQLL IDLCKLSLEF FTSNLVPARF KTSSNLRPLK DRLKMPEDEQ EPTLVQRHTA PAPISESRHA HLPKQSDTYP EHKPSKTRSS
401: SATKDPSSKH HRSSSSKRQE YAQFYASGEV VQPPKVHKER SRRRHRDKTT TETEPKTTTA SDTVKPVEYS NSSKFDHFNM RSSKYGPETP FRF
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.