Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008732.1-P | Field mustard | plasma membrane | 86.18 | 86.18 |
| AT5G14890.1 | Thale cress | plasma membrane | 87.47 | 84.02 |
| CDY09894 | Canola | golgi, plasma membrane | 81.21 | 81.21 |
| VIT_14s0066g01590.t01 | Wine grape | golgi | 54.21 | 50.0 |
| PGSC0003DMT400001332 | Potato | golgi | 50.32 | 46.32 |
| Solyc02g087010.2.1 | Tomato | golgi | 49.89 | 45.56 |
| KRG93349 | Soybean | golgi, plasma membrane, vacuole | 49.46 | 42.72 |
| TraesCS6A01G291600.1 | Wheat | plasma membrane | 45.79 | 42.23 |
| TraesCS6D01G272900.2 | Wheat | plasma membrane | 45.57 | 42.03 |
| TraesCS6B01G322100.1 | Wheat | plasma membrane | 45.57 | 42.03 |
| Os02t0730400-01 | Rice | golgi, plasma membrane, vacuole | 46.0 | 41.93 |
| CDY23504 | Canola | plasma membrane | 44.06 | 41.3 |
| HORVU6Hr1G072950.14 | Barley | golgi | 45.57 | 40.97 |
| CDY11605 | Canola | endoplasmic reticulum, plasma membrane | 42.98 | 40.95 |
| CDX68347 | Canola | endoplasmic reticulum, plasma membrane | 42.98 | 40.78 |
| CDY38803 | Canola | plasma membrane, vacuole | 44.71 | 40.67 |
| Os06t0269300-01 | Rice | mitochondrion | 45.36 | 40.62 |
| EES07314 | Sorghum | golgi, plasma membrane, vacuole | 45.36 | 40.54 |
| CDY47647 | Canola | plasma membrane | 41.9 | 40.25 |
| Zm00001d017926_P003 | Maize | golgi | 44.06 | 40.0 |
| CDY59085 | Canola | plasma membrane | 41.04 | 40.0 |
| Zm00001d051759_P001 | Maize | golgi, plasma membrane, plastid | 44.28 | 39.73 |
| GSMUA_Achr3P12850_001 | Banana | endoplasmic reticulum | 40.82 | 39.13 |
| EER89586 | Sorghum | golgi, plasma membrane | 42.76 | 39.05 |
| Zm00001d045703_P002 | Maize | plasma membrane | 42.33 | 38.74 |
| Zm00001d037307_P001 | Maize | plasma membrane, plastid, vacuole | 41.25 | 37.6 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 40.17 | 36.98 |
| TraesCS7B01G116500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 43.63 | 35.88 |
| TraesCS7D01G211500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 43.2 | 35.78 |
| TraesCS7A01G209600.1 | Wheat | endoplasmic reticulum, plasma membrane | 43.63 | 35.44 |
| HORVU7Hr1G042740.2 | Barley | plastid | 43.84 | 30.3 |
| CDY47648 | Canola | extracellular | 16.63 | 29.5 |
| CDX82461 | Canola | endoplasmic reticulum | 28.08 | 26.48 |
| CDX75794 | Canola | plastid | 28.08 | 26.37 |
| CDY59087 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 20.09 | 24.93 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 8.86 | 23.16 |
Protein Annotations
| EnsemblPlants:CDX69553 | EnsemblPlantsGene:GSBRNA2T00135560001 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:NHL_repeat | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF57 | PFAM:PF01436 |
| ProteinID:CDX69553 | ProteinID:CDX69553.1 | SEG:seg | SignalP:SignalP-TM | SUPFAM:SSF101898 | TMHMM:TMhelix |
| UniParc:UPI0004EE1079 | MapMan:35.2 | : | : | : | : |
Description
BnaA10g19020D
Coordinates
chrLK031790:-:785549..787960
Molecular Weight (calculated)
51856.5 Da
IEP (calculated)
7.690
GRAVY (calculated)
-0.499
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKNGNWVVL SLIFLVLLCG LSSVSAKPPP VKIVSGLVTN VASMLWKWLW SLQTSTTTTA TTKSGVSSRS MVKYESGYNI ETVFDGNKLG IEPYAVEVSP
101: SGEELIVLDS ENSNIHKISM PLSRYGKPKL VSGSQEGYTG HVDGKLKEAK MNRPRGLAID ESGNIYVADT NNMAIRKISD AGVSTIATGG RFSDDFDLIY
201: VSSTCSLLVI DRGNQVIREI QLHDHDCSHH EPETDLHLGT ALLVAAAFFG YMFALLVRRV RSLFSSFRHN NKRHVAKPNM TMAPYQRYPR PVRQPLIPPQ
301: YEPENEEGFL GSLGKLVVKT GSSVSEMMTG PRKVTPQDFH YHHPQQPNQW PVQESFAIPE EDGPPALEPR SGTNQDKPYL TAQGTNQNRS YYQDCDQYQN
401: QKKRNVNDTE ANRENEIVFG AVQEQDGRRE AMVIKAVDFK EAVNDQRNLR PRINYMGYSS QVY
101: SGEELIVLDS ENSNIHKISM PLSRYGKPKL VSGSQEGYTG HVDGKLKEAK MNRPRGLAID ESGNIYVADT NNMAIRKISD AGVSTIATGG RFSDDFDLIY
201: VSSTCSLLVI DRGNQVIREI QLHDHDCSHH EPETDLHLGT ALLVAAAFFG YMFALLVRRV RSLFSSFRHN NKRHVAKPNM TMAPYQRYPR PVRQPLIPPQ
301: YEPENEEGFL GSLGKLVVKT GSSVSEMMTG PRKVTPQDFH YHHPQQPNQW PVQESFAIPE EDGPPALEPR SGTNQDKPYL TAQGTNQNRS YYQDCDQYQN
401: QKKRNVNDTE ANRENEIVFG AVQEQDGRRE AMVIKAVDFK EAVNDQRNLR PRINYMGYSS QVY
001: MRKNANLLIL FMIFMFFFCG LSSVSAKPPP VKIVSGLVTN VASILWKWLW SLQTSTTTTT TTKSGVSSRS MVKYESGYNM ETVFDGSKLG IEPYAIEVSP
101: NGGELIVLDS ENSNIHKISM PLSRYGKPKL LSGSQEGYTG HVDGKLKEAR MNRPRGLAMD DRGNIYVADT INMAIRKISD DGVSTIAAGG RWSGGSKEES
201: MRFSDDFDLI YVSSSCSLLV IDRGNQLIKE IQLHDHDCSQ PEPDTDSLHL GTALLVAAVF FGYMLALLVR RVRSLFSSSS HDTKSKRHVA TPSMTMAPYQ
301: RYPRPVRQPL IPPQHESEKE EGFLGSLGKL VVKTGSSVSE MMSGSRNVIP PNFHQYHHQQ EPNQWPVQES FAIPEEDGPP ALEPRSGTNP DKPYLRAQGT
401: NQNRSYYQDY DQYQNQQKRN VNDTASFEDN REKNEIVFGA VQEQDGRREA MVIKAVDFNE AINDQRNLRP RINYMGYSSQ VY
101: NGGELIVLDS ENSNIHKISM PLSRYGKPKL LSGSQEGYTG HVDGKLKEAR MNRPRGLAMD DRGNIYVADT INMAIRKISD DGVSTIAAGG RWSGGSKEES
201: MRFSDDFDLI YVSSSCSLLV IDRGNQLIKE IQLHDHDCSQ PEPDTDSLHL GTALLVAAVF FGYMLALLVR RVRSLFSSSS HDTKSKRHVA TPSMTMAPYQ
301: RYPRPVRQPL IPPQHESEKE EGFLGSLGKL VVKTGSSVSE MMSGSRNVIP PNFHQYHHQQ EPNQWPVQES FAIPEEDGPP ALEPRSGTNP DKPYLRAQGT
401: NQNRSYYQDY DQYQNQQKRN VNDTASFEDN REKNEIVFGA VQEQDGRREA MVIKAVDFNE AINDQRNLRP RINYMGYSSQ VY
Arabidopsis Description
NHL domain-containing protein [Source:TAIR;Acc:AT5G14890]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.