CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003957.1-P	Field mustard	plasma membrane	98.16	98.16
CDY23504	Canola	plasma membrane	95.7	94.53
CDY11605	Canola	endoplasmic reticulum, plasma membrane	85.86	86.21
CDY38803	Canola	plasma membrane, vacuole	88.93	85.27
AT1G70280.2	Thale cress	plasma membrane	86.27	82.71
CDY59085	Canola	plasma membrane	69.06	70.95
CDY47647	Canola	plasma membrane	69.88	70.75
VIT_01s0026g00330.t01	Wine grape	plasma membrane	63.93	63.54
KRG99307	Soybean	golgi	59.84	58.17
Solyc05g005760.2.1	Tomato	nucleus	59.02	57.6
PGSC0003DMT400010531	Potato	golgi	59.43	57.31
KRH74622	Soybean	plasma membrane	58.81	56.61
KRH69528	Soybean	vacuole	56.35	54.03
KRH45706	Soybean	plasma membrane	44.88	52.02
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	53.69	51.57
TraesCS6B01G322100.1	Wheat	plasma membrane	52.87	51.39
TraesCS6A01G291600.1	Wheat	plasma membrane	52.66	51.2
TraesCS6D01G272900.2	Wheat	plasma membrane	52.66	51.2
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	50.61	51.14
HORVU6Hr1G072950.14	Barley	golgi	52.87	50.1
Zm00001d017926_P003	Maize	golgi	51.02	48.82
EES07314	Sorghum	golgi, plasma membrane, vacuole	51.43	48.46
Os06t0269300-01	Rice	mitochondrion	51.02	48.16
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	49.39	47.91
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	50.2	47.48
EER89586	Sorghum	golgi, plasma membrane	46.72	44.97
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	46.72	44.88
Zm00001d045703_P002	Maize	plasma membrane	45.29	43.68
CDX69553	Canola	plasma membrane	40.78	42.98
CDY09894	Canola	golgi, plasma membrane	40.57	42.76
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.75	41.39
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.34	41.32
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	47.34	40.53
HORVU7Hr1G042740.2	Barley	plastid	47.75	34.78
CDY47648	Canola	extracellular	18.03	33.72
CDX82461	Canola	endoplasmic reticulum	31.97	31.77
CDX75794	Canola	plastid	31.15	30.83
CDY25806	Canola	extracellular, plasma membrane, vacuole	10.25	28.25
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	19.26	25.2

Protein Annotations

Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078BVZ3	EnsemblPlants:CDX68347	ProteinID:CDX68347
ProteinID:CDX68347.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099650001	InterPro:IPR011042
InterPro:IPR013017	InterPro:NHL_repeat	InterPro:NHL_repeat_subgr	PFAM:PF01436	PFscan:PS51125	PANTHER:PTHR13833
PANTHER:PTHR13833:SF42	SUPFAM:SSF101898	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE3F1F	SEG:seg

Description

BnaA07g23870D

Coordinates

chrLK031787:+:5141928..5144518

Molecular Weight (calculated)

54336.4 Da

IEP (calculated)

6.580

GRAVY (calculated)

-0.545

Length

488 amino acids

Sequence
(BLAST)

001: MGRDILVVGT LILLCSGFVA SAPSANSPAK IVSGFISNHG SSLMKWLWSL KPTSTKTTIA TRSMVKFENG YTVETVFDGS KLGIEPYSIE VLPNGELLIL
101: DSENSNIYKI SSSLSLYSRP RLVTGSPEGY AGHVDGRLRD ARLNHPKGLT VDDRGNIYVA DSVNNAIRKI SEGGVTTIAG GKTARNGGHV DGPSEDAKFS
201: NDFDVVYLGS SCSLLVIDRG NKAIREIQLH FDDCAYQYGS GFPLGIAVLV AAGFFGYMLA LLQRRVGSIV YSHDQETFES DHDQKPSRPS LIPTGEEQQE
301: KQDESFLVSM GNLASNAWVS VMEIFRIKQP AATYQTKQSA AAFSTTAPWP IQESFVVRDE DEPPPVEHKN QTPRKTYAFM SKDAEKMQQL RQSREFYSSS
401: WEAEFPNQQQ QKQQQHRRHY SSIPHTYYEQ NSEQTNEIVF GAVQEQSSKR AAKPKESGEQ INNNNDTQQN LHYRAHSVSY PYGYYPYT

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.