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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • golgi 5
  • plasma membrane 6
  • endoplasmic reticulum 6
  • vacuole 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38803 Canola plasma membrane, vacuole 96.5 92.14
CDX68347 Canola endoplasmic reticulum, plasma membrane 86.21 85.86
CDY23504 Canola plasma membrane 87.04 85.63
AT1G70280.2 Thale cress plasma membrane 85.39 81.53
CDY59085 Canola plasma membrane 69.14 70.74
CDY47647 Canola plasma membrane 68.93 69.5
VIT_01s0026g00330.t01 Wine grape plasma membrane 64.4 63.75
KRG99307 Soybean golgi 60.49 58.57
Solyc05g005760.2.1 Tomato nucleus 60.08 58.4
PGSC0003DMT400010531 Potato golgi 60.7 58.3
KRH74622 Soybean plasma membrane 58.64 56.21
KRH69528 Soybean vacuole 56.17 53.63
TraesCS6B01G322100.1 Wheat plasma membrane 54.32 52.59
TraesCS6A01G291600.1 Wheat plasma membrane 54.32 52.59
TraesCS6D01G272900.2 Wheat plasma membrane 53.91 52.19
Os02t0730400-01 Rice golgi, plasma membrane, vacuole 54.32 51.97
KRH45706 Soybean plasma membrane 44.24 51.07
HORVU6Hr1G072950.14 Barley golgi 54.12 51.07
GSMUA_Achr3P12850_001 Banana endoplasmic reticulum 50.62 50.93
Zm00001d017926_P003 Maize golgi 52.47 50.0
EES07314 Sorghum golgi, plasma membrane, vacuole 52.47 49.23
Zm00001d051759_P001 Maize golgi, plasma membrane, plastid 51.85 48.84
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 50.0 48.31
Os06t0269300-01 Rice mitochondrion 51.23 48.16
EER89586 Sorghum golgi, plasma membrane 46.5 44.58
Zm00001d037307_P001 Maize plasma membrane, plastid, vacuole 46.3 44.29
Zm00001d045703_P002 Maize plasma membrane 45.06 43.28
CDX69553 Canola plasma membrane 40.95 42.98
CDY09894 Canola golgi, plasma membrane 40.74 42.76
TraesCS7D01G211500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 48.15 41.86
TraesCS7B01G116500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 48.35 41.74
TraesCS7A01G209600.1 Wheat endoplasmic reticulum, plasma membrane 48.15 41.05
HORVU7Hr1G042740.2 Barley plastid 48.77 35.37
CDY47648 Canola extracellular 18.72 34.87
CDX82461 Canola endoplasmic reticulum 32.1 31.77
CDX75794 Canola plastid 31.28 30.83
CDY25806 Canola extracellular, plasma membrane, vacuole 9.88 27.12
CDY59087 Canola endoplasmic reticulum, extracellular, plasma membrane 19.96 26.01
Protein Annotations
Gene3D:2.120.10.30MapMan:35.2InterPro:6-blade_b-propeller_TolB-likeGO:A0A078FB42UniProt:A0A078FB42EnsemblPlants:CDY11605
ProteinID:CDY11605ProteinID:CDY11605.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00049724001InterPro:IPR011042InterPro:NHL_repeatPFAM:PF01436
PANTHER:PTHR13833PANTHER:PTHR13833:SF42SUPFAM:SSF63829SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EEB444
SEG:seg:::::
Description
BnaC06g31340DBnaC06g31340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB42]
Coordinates
chrLK032012:+:446187..448654
Molecular Weight (calculated)
54106.4 Da
IEP (calculated)
6.448
GRAVY (calculated)
-0.507
Length
486 amino acids
Sequence
(BLAST)
001: MGRDFLLLGI LILLLSGFVS SAPSANSPAK IINGFIANHG SSLMKWIWSL KTTTKTTIAT RSMVKFEDGY SVETVFDGSK LGIEPYSVEV LPNGELLVLD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYA GHVDGRLRDA RLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTARNGGHVD GPSEDAKFSN
201: DFDVVYLGSS CSLLVIDRGN KAIREIQLHF DDCAYQYESG FPLGIAVLIA AGFFGYMLAL LQRRVGSIVS SQNVSVLDQD TFEGDADQKP VKPFRPSLIP
301: NGDEQLLEKQ DESSLASLGN LASNAWVTVT EMLRKKQAAT SFEQYQTKQS TTAPWPIQES FVIPEEDEPP PVEHRNQTPR KTYAFMSKDA EKMQQLRQSR
401: AFYSSWEAAE FPNQQQQKQQ QKQQHRRHYS SIPHTYYEQN SEKTNEIVFG APKESADQIN NNANPQQNLH YRAHSVSYPY GYYPYT
Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.