Factsheet for TraesCS6D01G272900.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G291600.1	Wheat	plasma membrane	98.21	98.21
TraesCS6B01G322100.1	Wheat	plasma membrane	97.41	97.41
HORVU6Hr1G072950.14	Barley	golgi	96.81	94.37
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	86.85	85.83
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	80.68	78.49
EES07314	Sorghum	golgi, plasma membrane, vacuole	80.88	78.38
Zm00001d017926_P003	Maize	golgi	79.28	78.04
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	69.12	62.08
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	61.55	61.43
VIT_01s0026g00330.t01	Wine grape	plasma membrane	57.77	59.06
KRH74622	Soybean	plasma membrane	57.97	57.4
KRG99307	Soybean	golgi	56.77	56.77
KRH69528	Soybean	vacuole	56.18	55.4
VIT_14s0066g01590.t01	Wine grape	golgi	54.38	54.38
AT1G70280.2	Thale cress	plasma membrane	54.98	54.22
CDY11605	Canola	endoplasmic reticulum, plasma membrane	52.19	53.91
Solyc05g005760.2.1	Tomato	nucleus	53.39	53.6
CDY38803	Canola	plasma membrane, vacuole	53.98	53.24
Bra016227.1-P	Field mustard	plasma membrane, vacuole	54.18	53.12
PGSC0003DMT400010531	Potato	golgi	53.19	52.77
PGSC0003DMT400001332	Potato	golgi	52.79	52.68
CDX68347	Canola	endoplasmic reticulum, plasma membrane	51.2	52.66
Bra003957.1-P	Field mustard	plasma membrane	51.0	52.46
CDY23504	Canola	plasma membrane	51.39	52.23
Solyc02g087010.2.1	Tomato	golgi	51.99	51.48
KRH45706	Soybean	plasma membrane	42.83	51.07
CDY59085	Canola	plasma membrane	47.21	49.89
CDY47647	Canola	plasma membrane	47.01	48.96
Bra024625.1-P	Field mustard	plasma membrane	48.21	48.5
KRG93349	Soybean	golgi, plasma membrane, vacuole	50.6	47.39
CDX69553	Canola	plasma membrane	42.03	45.57
Solyc10g018280.1.1	Tomato	cytosol	6.37	45.07
AT1G23880.1	Thale cress	plasma membrane	48.8	44.95
Bra008732.1-P	Field mustard	plasma membrane	41.24	44.71
CDY09894	Canola	golgi, plasma membrane	41.04	44.49
AT5G14890.1	Thale cress	plasma membrane	42.63	44.4
Solyc10g018290.1.1	Tomato	extracellular	7.57	44.19
Solyc06g048720.1.1	Tomato	endoplasmic reticulum, extracellular	8.96	39.47
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	29.88	30.43
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	19.52	23.0

Protein Annotations

EnsemblPlants:TraesCS6D01G272900.2	EnsemblPlantsGene:TraesCS6D01G272900	Gene3D:2.120.10.30	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	PANTHER:PTHR13833
PANTHER:PTHR13833:SF59	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr6D:-:381552149..381556139

Molecular Weight (calculated)

54691.0 Da

IEP (calculated)

8.882

GRAVY (calculated)

-0.356

Length

502 amino acids

Sequence
(BLAST)

001: MGAARGGVSA LLVAALLLGA FAPPASAASY PAKVVSGFLS NAASAVLKRL WSLKSTVKTA SGAKSMVKYE GGYTVETVFD GSKLGIEPYT VEVTQGGELL
101: VMDSMNSNIY RIALPLSRYS RPKLVAGSPE GIPGHIDGRL REAKMNHPKG FTVDGRGNIY VADAMNMAVR KISDTGVTTI AGGKSSRGGH VDGPSDDAKF
201: STDFEVRYIA SSCSLLVIDR GNQAIREIQL NFDDCVYQYE AGFPLGVALL LAAAFFGYML ALLQRRVLGM VSTEDELQTP MKASIASIPP YQIQKPLKPS
301: LRPPLIPNED ESEKQEVEEG FFTSLGKLIG GAKSSVAEIV GAAFSRKKRP SVHHYQQGRA SPWPVQESYA IPRDETPPVV DTRTPTPRKN YAFMSKEPEK
401: IHHIRQGRAP YNGWNNGESP QQQQQQQQQQ VHHQYLQHNR QYSLGPQTFY EPSCEAANEI VFGAVQEVDS ARRAVEIKPV NHCDAAAYEQ GGLRYRSSGY
501: MG

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.