Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G153900.1 | Wheat | extracellular, plasma membrane, vacuole | 82.39 | 87.31 |
| TraesCS2A01G131500.2 | Wheat | extracellular, golgi, plasma membrane | 77.7 | 78.62 |
| Os08t0414600-01 | Rice | extracellular | 35.21 | 54.55 |
| EES13823 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 50.47 | 51.68 |
| Zm00001d032308_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 46.71 | 47.61 |
| CDY47648 | Canola | extracellular | 23.47 | 38.31 |
| AT1G23890.2 | Thale cress | extracellular | 30.28 | 32.25 |
| Bra024626.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 26.76 | 30.56 |
| CDY59087 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 25.82 | 29.49 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 12.21 | 29.38 |
| VIT_01s0026g00320.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 30.05 | 29.22 |
| Solyc05g005770.2.1 | Tomato | nucleus | 25.82 | 27.64 |
| PGSC0003DMT400010568 | Potato | extracellular | 25.82 | 27.43 |
| KRH45709 | Soybean | endoplasmic reticulum | 24.41 | 26.0 |
| TraesCS6D01G272900.2 | Wheat | plasma membrane | 23.0 | 19.52 |
| TraesCS7D01G211500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 24.18 | 18.43 |
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 20.66 | 17.85 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G133600.2 | EnsemblPlantsGene:TraesCS2D01G133600 | Gene3D:2.120.10.30 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | PANTHER:PTHR13833 |
| PANTHER:PTHR13833:SF71 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF101898 | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr2D:+:78689571..78692592
Molecular Weight (calculated)
45276.9 Da
IEP (calculated)
6.943
GRAVY (calculated)
-0.038
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPRVLLG HALLLTPLLP LLACAGLVLE DGYTVSTVSD LNPTGTHPYA LLPRPRAGDL VLLDSAGSTL YTLPLPVSAD AGPRRLAGGA GAFGRGHPRS
101: IAVDGADNVY VADRANGSIR KVAPSGYTTT IAGAYSVGTG HRDEPAQNAT FSADFELIYV PKICALLVAD RGNRLIRQIK LKPEDCAHEN QKGLGTTSAS
201: IIAILAALFG SIIGFLARHF YPFHEVSINR FFSRIQRQYR RTQRKAALIS FSDIRNAIAN SMLSTVLLKL VRVSVGYLTV VLPSIRLERG VACKPSPSSP
301: SPPSLLDLDM ASTTTPAIGL GNEALPSTEL LGDFVGFDDS DSATDEGNES AFDGSAPQDE NKETSLDRDL LALLDIQQGS YKKIDNMIEA NLSDFSGQDK
401: YCSPAVNYSG VSRRFHGGSK GSLSSL
101: IAVDGADNVY VADRANGSIR KVAPSGYTTT IAGAYSVGTG HRDEPAQNAT FSADFELIYV PKICALLVAD RGNRLIRQIK LKPEDCAHEN QKGLGTTSAS
201: IIAILAALFG SIIGFLARHF YPFHEVSINR FFSRIQRQYR RTQRKAALIS FSDIRNAIAN SMLSTVLLKL VRVSVGYLTV VLPSIRLERG VACKPSPSSP
301: SPPSLLDLDM ASTTTPAIGL GNEALPSTEL LGDFVGFDDS DSATDEGNES AFDGSAPQDE NKETSLDRDL LALLDIQQGS YKKIDNMIEA NLSDFSGQDK
401: YCSPAVNYSG VSRRFHGGSK GSLSSL
001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.