CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	63.22	62.92
Os08t0414600-01	Rice	extracellular	37.02	56.0
TraesCS2A01G131500.2	Wheat	extracellular, golgi, plasma membrane	51.92	51.31
TraesCS2B01G153900.1	Wheat	extracellular, plasma membrane, vacuole	49.52	51.24
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	51.68	50.47
CDY47648	Canola	extracellular	24.28	38.7
AT1G23890.2	Thale cress	extracellular	32.21	33.5
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	33.65	31.96
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	27.4	30.56
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	27.4	30.56
CDY25806	Canola	extracellular, plasma membrane, vacuole	12.98	30.51
KRH45709	Soybean	endoplasmic reticulum	28.12	29.25
PGSC0003DMT400010568	Potato	extracellular	28.12	29.18
Solyc05g005770.2.1	Tomato	nucleus	27.64	28.89
OQU84683	Sorghum	golgi	24.04	20.2
EER89586	Sorghum	golgi, plasma membrane	22.6	18.54
EES07314	Sorghum	golgi, plasma membrane, vacuole	22.12	17.76

Protein Annotations

EnsemblPlants:EES13823	EnsemblPlantsGene:SORBI_3007G125700	EntrezGene:8073549	Gene3D:2.120.10.30	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	PANTHER:PTHR13833	PANTHER:PTHR13833:SF71	ProteinID:EES13823
ProteinID:EES13823.1	RefSeq:XP_002444328.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898	TMHMM:TMhelix
unigene:Sbi.15059	UniParc:UPI0001A877F4	UniProt:C5YKV5	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr7:+:53687874..53690902

Molecular Weight (calculated)

44802.1 Da

IEP (calculated)

9.622

GRAVY (calculated)

-0.002

Length

416 amino acids

Sequence
(BLAST)

001: MASSPRHLFL LLPLRLLLLI PLLAAAKPVL EDGYTVTTFA NFNPLPASGP HPYAILPRPR AGDLLLLDSA GSALYTLSLS SSPGEPRRLA GGKRRSGFDD
101: GDAAFDRPRS VAVDAADNVY VADQRHGAVR KVAPSGYTTT VAGGLSSGPG HRDGLAQNAT FSADFELVYV PKICALLVAD RGNRMVRQIN LKPEDCAHEK
201: QSGLGTTSVS VIAILCALLG LIIGFLVRHF YPVNEVSINH FFIRIQKQFL RTQRKATLIS FCDIKSAVAS SAAYTLLLRL IRFGCGYITV VFPSVRLQQE
301: VPLRPCRRRP VLRKTSTAPN IGLNNKAPLP PTGLLEDLIS FAGDAGDNEG SGNANSQEGK VSSYEGDLMG LLYTPPDSVK KIDHMIETNL SGFSSHVNRC
401: RLTVSGCSVS RRVHGD

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.