CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017926_P003	Maize	golgi	94.59	96.08
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	92.28	92.64
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	80.69	82.28
TraesCS6A01G291600.1	Wheat	plasma membrane	79.15	81.67
TraesCS6D01G272900.2	Wheat	plasma membrane	78.38	80.88
TraesCS6B01G322100.1	Wheat	plasma membrane	78.38	80.88
HORVU6Hr1G072950.14	Barley	golgi	78.76	79.22
EER89586	Sorghum	golgi, plasma membrane	63.13	64.5
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	59.46	61.23
VIT_01s0026g00330.t01	Wine grape	plasma membrane	55.21	58.25
KRH74622	Soybean	plasma membrane	55.21	56.41
KRG99307	Soybean	golgi	54.44	56.18
KRH69528	Soybean	vacuole	52.9	53.83
VIT_14s0066g01590.t01	Wine grape	golgi	51.35	52.99
Solyc05g005760.2.1	Tomato	nucleus	50.77	52.6
CDY11605	Canola	endoplasmic reticulum, plasma membrane	49.23	52.47
PGSC0003DMT400001332	Potato	golgi	50.58	52.09
AT1G70280.2	Thale cress	plasma membrane	50.77	51.67
PGSC0003DMT400010531	Potato	golgi	50.39	51.58
CDX68347	Canola	endoplasmic reticulum, plasma membrane	48.46	51.43
Bra003957.1-P	Field mustard	plasma membrane	48.26	51.23
Solyc02g087010.2.1	Tomato	golgi	50.0	51.08
Bra016227.1-P	Field mustard	plasma membrane, vacuole	50.39	50.98
CDY38803	Canola	plasma membrane, vacuole	50.0	50.88
CDY23504	Canola	plasma membrane	48.26	50.61
KRH45706	Soybean	plasma membrane	41.12	50.59
CDY47647	Canola	plasma membrane	46.53	50.0
CDY59085	Canola	plasma membrane	45.75	49.89
Bra024625.1-P	Field mustard	plasma membrane	47.1	48.9
Solyc10g018280.1.1	Tomato	cytosol	6.56	47.89
Solyc10g018290.1.1	Tomato	extracellular	7.92	47.67
KRG93349	Soybean	golgi, plasma membrane, vacuole	49.23	47.57
CDY09894	Canola	golgi, plasma membrane	40.54	45.36
CDX69553	Canola	plasma membrane	40.54	45.36
Bra008732.1-P	Field mustard	plasma membrane	40.54	45.36
AT1G23880.1	Thale cress	plasma membrane	47.3	44.95
AT5G14890.1	Thale cress	plasma membrane	40.73	43.78
Solyc06g048720.1.1	Tomato	endoplasmic reticulum, extracellular	8.49	38.6
OQU84683	Sorghum	golgi	28.19	29.49
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	17.76	22.12

Protein Annotations

EnsemblPlants:EES07314	EnsemblPlantsGene:SORBI_3004G250600	EntrezGene:8077695	Gene3D:2.120.10.30	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	PANTHER:PTHR13833	PANTHER:PTHR13833:SF59	ProteinID:EES07314
ProteinID:EES07314.1	RefSeq:XP_002454338.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898	TMHMM:TMhelix
UniParc:UPI0001A85A98	UniProt:C5XZD2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:59693428..59697195

Molecular Weight (calculated)

56505.0 Da

IEP (calculated)

9.161

GRAVY (calculated)

-0.482

Length

518 amino acids

Sequence
(BLAST)

001: MATKGGNARG VPVGALLVAA LLLSSLAPAS ASSYPARVVS GFLSNAASAV VKRMWSLKST TKTAASGGKS MVKYEGGYTV ETVFDGSKLG IEPYSVEVTQ
101: GGELLVMDSM NSNIYRMALP LSRYSRPKLV AGSPEGFPGH VDGKLREARM NHPKGFTVDD RGNIYVADAM NMAIRKISDT GVTTIAGGKS GRGGHVDGPS
201: DEAKFSTDFE VRYVGSSCSL LVIDRGNQAI REIQLHFDDC VYQYEAGFPL GVALLLAAAF FGYMLALLQR RVLGMYSNGD EQEHESPVKA KLSSIPPPYQ
301: KPLKPSLRPP LIPTDDEPVK QEEEEGLFTS IGKLVGGAKS SIAEIIGAAF SRKKRVNIHH HQLGRPTSWP VQESYAIPRD ETPPPLDTRA PTPRKNYAFM
401: SKEPEKIHHI RHGRPQLHGW TGEAAPQQQQ QQQPPSQPQQ VHHQQYLQHH RQYSAGPQTF YEPSCDATKE IVFGAVQEGD TSRRPVEIKA VNHGDAASYE
501: QNGLRFRSSY SMGYNGNN

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.