Factsheet for Solyc02g087010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001332	Potato	golgi	96.65	97.42
VIT_14s0066g01590.t01	Wine grape	golgi	64.1	64.74
Solyc05g005760.2.1	Tomato	nucleus	52.86	53.6
Solyc10g018280.1.1	Tomato	cytosol	7.5	53.52
KRG93349	Soybean	golgi, plasma membrane, vacuole	55.62	52.61
TraesCS6A01G291600.1	Wheat	plasma membrane	52.07	52.59
TraesCS6D01G272900.2	Wheat	plasma membrane	51.48	51.99
TraesCS6B01G322100.1	Wheat	plasma membrane	51.48	51.99
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	51.87	51.77
HORVU6Hr1G072950.14	Barley	golgi	52.07	51.26
Solyc10g018290.1.1	Tomato	extracellular	8.68	51.16
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	51.48	50.58
Zm00001d017926_P003	Maize	golgi	50.69	50.39
EES07314	Sorghum	golgi, plasma membrane, vacuole	51.08	50.0
CDX69553	Canola	plasma membrane	45.56	49.89
Bra008732.1-P	Field mustard	plasma membrane	44.58	48.81
Os06t0269300-01	Rice	mitochondrion	49.7	48.74
AT5G14890.1	Thale cress	plasma membrane	45.96	48.34
CDY09894	Canola	golgi, plasma membrane	43.79	47.95
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	47.53	47.91
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	44.77	47.0
EER89586	Sorghum	golgi, plasma membrane	46.94	46.94
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	46.15	46.06
Zm00001d045703_P002	Maize	plasma membrane	45.36	45.45
Solyc06g048720.1.1	Tomato	endoplasmic reticulum, extracellular	9.86	43.86
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.73	43.29
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.73	42.98
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	47.93	42.63
HORVU7Hr1G042740.2	Barley	plastid	48.72	36.87
Solyc07g062300.2.1	Tomato	plasma membrane	27.81	29.44
Solyc05g005770.2.1	Tomato	nucleus	19.72	25.13

Protein Annotations

EnsemblPlants:Solyc02g087010.2.1	EnsemblPlantsGene:Solyc02g087010.2	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat
PANTHER:PTHR13833	PANTHER:PTHR13833:SF57	PFAM:PF01436	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898
TMHMM:TMhelix	UniParc:UPI0002767D3C	UniProt:K4BBK8	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2:+:49566691..49570507

Molecular Weight (calculated)

57124.1 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.547

Length

507 amino acids

Sequence
(BLAST)

001: MKRNWVVLFL VIFFLLIEVS SASATPAAKI VGGVVANVAS VMFKWAWSLK STTKTAVSTR SMIKFESGYV VETVFDGSKM GIEPYSVEVS STGEVLILDC
101: ENSNVYRVST PLSRYSRPKL VAGSPEGYSG HVDGRLREAR MDHPKGIAMD DQGNIYVADT MNMAIRKISD AGVVTIAGGK SARGGGHLDG PSEDAQFSDD
201: FDVVFVGSSC SLLVIDRGNQ AIREIQLNDD DCSHQYDDNN LQLGVALLCA AVFFGYMLAL LQRRIGALFS SNSDDQRAPV RGMQHPPYQR NMKSVRPPII
301: PPEDEYEKQD ENLFLSLGRL VMNTGSTVVE IFGGMFSGFR KNSYPHHVQQ HYHYNHKQSS TWPMQESYVI RDEDEAPPLD TRDPTPRKTY PIMNKDPEKP
401: RHIRQSQSHY VGWNGNAHGH GNFQQQQHQH QQQFLPQVYQ HHDKHQSSSP QTYYEESCET KEIVFGAVQE QDGRHETMVI KAVDYGDPAY NNHNVRSRYN
501: YSTRYSF

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.