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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 6
  • golgi 6
  • plasma membrane 6
  • endoplasmic reticulum 5
  • vacuole 6
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:extracellular, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400010531 Potato golgi 96.8 95.65
Solyc06g048720.1.1 Tomato endoplasmic reticulum, extracellular 17.0 74.56
Solyc10g018290.1.1 Tomato extracellular 12.4 72.09
Solyc10g018280.1.1 Tomato cytosol 9.8 69.01
VIT_01s0026g00330.t01 Wine grape plasma membrane 66.6 67.82
KRG99307 Soybean golgi 65.2 64.94
KRH74622 Soybean plasma membrane 62.2 61.34
CDY11605 Canola endoplasmic reticulum, plasma membrane 58.4 60.08
KRH69528 Soybean vacuole 60.8 59.73
Bra003957.1-P Field mustard plasma membrane 58.2 59.63
KRH45706 Soybean plasma membrane 49.8 59.14
CDX68347 Canola endoplasmic reticulum, plasma membrane 57.6 59.02
CDY23504 Canola plasma membrane 58.2 58.91
AT1G70280.2 Thale cress plasma membrane 59.0 57.96
Bra016227.1-P Field mustard plasma membrane, vacuole 59.2 57.81
CDY38803 Canola plasma membrane, vacuole 58.4 57.37
CDY59085 Canola plasma membrane 52.0 54.74
Os02t0730400-01 Rice golgi, plasma membrane, vacuole 55.6 54.72
TraesCS6B01G322100.1 Wheat plasma membrane 54.2 53.98
CDY47647 Canola plasma membrane 52.0 53.94
TraesCS6A01G291600.1 Wheat plasma membrane 54.0 53.78
GSMUA_Achr3P12850_001 Banana endoplasmic reticulum 51.6 53.42
TraesCS6D01G272900.2 Wheat plasma membrane 53.6 53.39
Bra024625.1-P Field mustard plasma membrane 53.2 53.31
Solyc02g087010.2.1 Tomato golgi 53.6 52.86
HORVU6Hr1G072950.14 Barley golgi 54.0 52.43
AT1G23880.1 Thale cress plasma membrane 55.4 50.83
EES07314 Sorghum golgi, plasma membrane, vacuole 52.6 50.77
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 51.0 50.7
Zm00001d051759_P001 Maize golgi, plasma membrane, plastid 52.2 50.58
Zm00001d017926_P003 Maize golgi 51.0 50.0
Os06t0269300-01 Rice mitochondrion 51.2 49.52
EER89586 Sorghum golgi, plasma membrane 47.4 46.75
Zm00001d037307_P001 Maize plasma membrane, plastid, vacuole 46.4 45.67
Zm00001d045703_P002 Maize plasma membrane 46.2 45.65
TraesCS7B01G116500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 50.2 44.58
TraesCS7D01G211500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 49.6 44.36
TraesCS7A01G209600.1 Wheat endoplasmic reticulum, plasma membrane 49.8 43.68
HORVU7Hr1G042740.2 Barley plastid 50.8 37.91
Solyc07g062300.2.1 Tomato plasma membrane 28.0 29.23
Solyc05g005770.2.1 Tomato nucleus 21.0 26.38
Protein Annotations
Gene3D:2.120.10.30MapMan:35.2InterPro:6-blade_b-propeller_TolB-likeGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:IPR011042UniProt:K4BWA3InterPro:NHL_repeat
PFAM:PF01436PANTHER:PTHR13833PANTHER:PTHR13833:SF42SUPFAM:SSF101898SignalP:SignalP-noTMEnsemblPlantsGene:Solyc05g005760.2
EnsemblPlants:Solyc05g005760.2.1TMHMM:TMhelixUniParc:UPI0002766FF4SEG:seg::
Description
No Description!
Coordinates
chr5:+:582377..585803
Molecular Weight (calculated)
55747.9 Da
IEP (calculated)
7.466
GRAVY (calculated)
-0.436
Length
500 amino acids
Sequence
(BLAST)
001: MAVKFATLIL IFVFLSAAFC SVSATPSPAK IVNGVVSNAV TKLMKWVWSL KANTKTVISG RPMMKFESGY SVETVFDGSK LGIEPYSVEI MSSGELLILD
101: SANSNLYKIS SSLSQYTRPR LVAGSADGYS GHVDGKLREA RMNHPKGLTV DDRGNIYVAD TDNMVIRKIS DAGTVTTIAG GKWSRGGGHV DGPSEDAKFS
201: NDFDVVFMGS SCSLLVIDRG NKAIREIQLH FEDCAYQYDS GFPLGIAVLL AAGFFGYMLA LLQRRVGTMV SPEENAFIFT DNYEKPVKSS VRPPLIPTEG
301: EVEKQEESMF GSLGNLITRT GASVSEILGG VFPMFRRLPL NHHYQQQQQY QQQQYQQQQY QQHTWPVQDS VVVPKEDEPP SIEPRTPTPR KTYAFMSKDS
401: EKMQQLKQSR AFYGGGWSSD FQQHQQQTQK HLQHHQYHSS GPQTFYEQSA DNTKEVVFGA IQEQGQREAM IIKPLDHANS VYDRHNARSR FNSAGYSQGY
Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.