Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- plastid 2
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23504 | Canola | plasma membrane | 84.48 | 87.04 |
| Bra003957.1-P | Field mustard | plasma membrane | 83.3 | 86.89 |
| CDX68347 | Canola | endoplasmic reticulum, plasma membrane | 82.71 | 86.27 |
| CDY38803 | Canola | plasma membrane, vacuole | 85.66 | 85.66 |
| Bra016227.1-P | Field mustard | plasma membrane, vacuole | 86.05 | 85.55 |
| CDY11605 | Canola | endoplasmic reticulum, plasma membrane | 81.53 | 85.39 |
| VIT_01s0026g00330.t01 | Wine grape | plasma membrane | 64.64 | 67.01 |
| AT1G23880.1 | Thale cress | plasma membrane | 70.73 | 66.06 |
| KRG99307 | Soybean | golgi | 61.1 | 61.95 |
| Solyc05g005760.2.1 | Tomato | nucleus | 57.96 | 59.0 |
| KRH74622 | Soybean | plasma membrane | 58.74 | 58.97 |
| PGSC0003DMT400010531 | Potato | golgi | 57.76 | 58.1 |
| KRH69528 | Soybean | vacuole | 56.19 | 56.19 |
| KRH45706 | Soybean | plasma membrane | 45.97 | 55.58 |
| TraesCS6A01G291600.1 | Wheat | plasma membrane | 54.62 | 55.38 |
| TraesCS6B01G322100.1 | Wheat | plasma membrane | 54.42 | 55.18 |
| TraesCS6D01G272900.2 | Wheat | plasma membrane | 54.22 | 54.98 |
| Os02t0730400-01 | Rice | golgi, plasma membrane, vacuole | 54.42 | 54.53 |
| HORVU6Hr1G072950.14 | Barley | golgi | 54.81 | 54.17 |
| GSMUA_Achr3P12850_001 | Banana | endoplasmic reticulum | 49.71 | 52.38 |
| Zm00001d017926_P003 | Maize | golgi | 51.28 | 51.18 |
| Zm00001d051759_P001 | Maize | golgi, plasma membrane, plastid | 51.87 | 51.16 |
| EES07314 | Sorghum | golgi, plasma membrane, vacuole | 51.67 | 50.77 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid | 49.71 | 50.3 |
| Os06t0269300-01 | Rice | mitochondrion | 51.08 | 50.29 |
| EER89586 | Sorghum | golgi, plasma membrane | 46.95 | 47.14 |
| Zm00001d037307_P001 | Maize | plasma membrane, plastid, vacuole | 46.37 | 46.46 |
| Zm00001d045703_P002 | Maize | plasma membrane | 45.97 | 46.25 |
| AT5G14890.1 | Thale cress | plasma membrane | 42.24 | 44.61 |
| TraesCS7D01G211500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 48.33 | 44.01 |
| TraesCS7B01G116500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 48.33 | 43.69 |
| TraesCS7A01G209600.1 | Wheat | endoplasmic reticulum, plasma membrane | 47.94 | 42.81 |
| HORVU7Hr1G042740.2 | Barley | plastid | 48.72 | 37.01 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 30.45 | 31.44 |
| AT1G23890.2 | Thale cress | extracellular | 20.43 | 26.0 |
Protein Annotations
| Gene3D:2.120.10.30 | MapMan:35.2 | InterPro:6-blade_b-propeller_TolB-like | EntrezGene:843364 | ProteinID:AEE35041.1 | ArrayExpress:AT1G70280 |
| EnsemblPlantsGene:AT1G70280 | RefSeq:AT1G70280 | TAIR:AT1G70280 | RefSeq:AT1G70280-TAIR-G | EnsemblPlants:AT1G70280.2 | TAIR:AT1G70280.2 |
| Unigene:At.10660 | ncoils:Coil | UniProt:F4I5D7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR011042 | InterPro:NHL_repeat |
| RefSeq:NP_177185.3 | PFAM:PF01436 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF42 | SUPFAM:SSF63829 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0000197163 | SEG:seg | : | : | : |
Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
Coordinates
chr1:-:26465804..26468804
Molecular Weight (calculated)
56933.9 Da
IEP (calculated)
8.209
GRAVY (calculated)
-0.617
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.