Factsheet for Bra003957.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68347	Canola	endoplasmic reticulum, plasma membrane	98.16	98.16
Bra016227.1-P	Field mustard	plasma membrane, vacuole	89.75	85.55
AT1G70280.2	Thale cress	plasma membrane	86.89	83.3
Bra024625.1-P	Field mustard	plasma membrane	71.72	70.14
VIT_01s0026g00330.t01	Wine grape	plasma membrane	64.34	63.95
KRG99307	Soybean	golgi	60.45	58.76
Solyc05g005760.2.1	Tomato	nucleus	59.63	58.2
PGSC0003DMT400010531	Potato	golgi	60.04	57.91
KRH74622	Soybean	plasma membrane	59.02	56.8
KRH69528	Soybean	vacuole	56.56	54.22
KRH45706	Soybean	plasma membrane	45.29	52.49
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	51.02	51.55
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	53.48	51.38
TraesCS6B01G322100.1	Wheat	plasma membrane	52.66	51.2
TraesCS6A01G291600.1	Wheat	plasma membrane	52.46	51.0
TraesCS6D01G272900.2	Wheat	plasma membrane	52.46	51.0
HORVU6Hr1G072950.14	Barley	golgi	52.66	49.9
Zm00001d017926_P003	Maize	golgi	51.02	48.82
Os06t0269300-01	Rice	mitochondrion	51.23	48.36
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	49.8	48.31
EES07314	Sorghum	golgi, plasma membrane, vacuole	51.23	48.26
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	50.0	47.29
EER89586	Sorghum	golgi, plasma membrane	46.72	44.97
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	46.72	44.88
Zm00001d045703_P002	Maize	plasma membrane	45.29	43.68
Bra008732.1-P	Field mustard	plasma membrane	40.98	43.2
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.54	41.21
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.13	41.14
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	47.13	40.35
HORVU7Hr1G042740.2	Barley	plastid	47.54	34.63
Bra001570.1-P	Field mustard	plastid	31.35	31.03
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	18.85	24.66

Protein Annotations

Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	EnsemblPlantsGene:Bra003957	EnsemblPlants:Bra003957.1	EnsemblPlants:Bra003957.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR011042	UniProt:M4CIC4	InterPro:NHL_repeat	PFAM:PF01436	PANTHER:PTHR13833
PANTHER:PTHR13833:SF42	SUPFAM:SSF101898	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00025418FC	SEG:seg

Description

AT1G70280 (E=6e-205) | NHL repeat-containing protein

Coordinates

chrA07:+:15955229..15957464

Molecular Weight (calculated)

54368.5 Da

IEP (calculated)

6.580

GRAVY (calculated)

-0.535

Length

488 amino acids

Sequence
(BLAST)

001: MGREVLVVGI LILLCSEFVS SAPSANSPAK IVSGFISNHG SSLMKWLWSL KSTSTKTTIA TRSMVKFENG YSVETVFDGS KLGIEPYSIE VLPNGELLIL
101: DSENSNIYKI SSSLSLYSRP RLVTGSPEGY AGHVDGRLRD ARLNHPKGLT VDDRGNIYVA DTVNNAIRKI SEGGVTTIAG GKTARNGGHV DGPSEDAKFS
201: NDFDVVYLGS SCSLLVIDRG NKAIREIQLH FDDCAYQYGS GFPLGIAVLV AAGFFGYMLA LLQRRVGSIV YSHDQETFES DHDQKPSRPS LIPTGEEQQE
301: KQDESFLVSM GNLASNAWVS VMEIFRIKQP AATYQTKQSA AAFSTTAPWP IQESFVVRDE DEPPPVEHKN QTPRKTYAFM SKDAEKMQQL RQSRAFYSSS
401: WEAEFPNQQQ QKQQQHRRHY SSIPHTYYEQ NSEQTNEIVF GAVQEQSSKR AAKPKESGEQ INNNNDTQQN LHYRAHSVSY PYGYYPYT

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.