Factsheet for GSMUA_Achr10P01880_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G322100.1	Wheat	plasma membrane	62.23	62.35
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	62.43	61.81
TraesCS6A01G291600.1	Wheat	plasma membrane	61.63	61.75
TraesCS6D01G272900.2	Wheat	plasma membrane	61.43	61.55
HORVU6Hr1G072950.14	Barley	golgi	62.62	61.16
EES07314	Sorghum	golgi, plasma membrane, vacuole	61.23	59.46
Zm00001d017926_P003	Maize	golgi	59.24	58.43
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	59.64	58.14
Os06t0269300-01	Rice	mitochondrion	58.85	57.25
VIT_01s0026g00330.t01	Wine grape	plasma membrane	55.86	57.23
EER89586	Sorghum	golgi, plasma membrane	56.06	55.62
Solyc10g018280.1.1	Tomato	cytosol	7.75	54.93
Zm00001d045703_P002	Maize	plasma membrane	54.27	53.95
Solyc10g018290.1.1	Tomato	extracellular	8.95	52.33
KRH74622	Soybean	plasma membrane	52.29	51.87
KRG99307	Soybean	golgi	51.69	51.79
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	49.3	51.35
VIT_14s0066g01590.t01	Wine grape	golgi	51.09	51.2
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	51.69	51.18
Solyc05g005760.2.1	Tomato	nucleus	50.7	51.0
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	57.06	50.98
KRH69528	Soybean	vacuole	51.09	50.49
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	56.06	50.45
CDY11605	Canola	endoplasmic reticulum, plasma membrane	48.31	50.0
PGSC0003DMT400010531	Potato	golgi	50.1	49.8
Bra003957.1-P	Field mustard	plasma membrane	48.31	49.8
AT1G70280.2	Thale cress	plasma membrane	50.3	49.71
CDX68347	Canola	endoplasmic reticulum, plasma membrane	47.91	49.39
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	55.86	49.3
Bra016227.1-P	Field mustard	plasma membrane, vacuole	50.1	49.22
CDY23504	Canola	plasma membrane	48.11	48.99
CDY38803	Canola	plasma membrane, vacuole	49.5	48.92
PGSC0003DMT400001332	Potato	golgi	48.51	48.51
Solyc02g087010.2.1	Tomato	golgi	47.91	47.53
KRH45706	Soybean	plasma membrane	39.56	47.27
CDY47647	Canola	plasma membrane	44.53	46.47
CDY59085	Canola	plasma membrane	43.34	45.89
Bra024625.1-P	Field mustard	plasma membrane	45.13	45.49
KRG93349	Soybean	golgi, plasma membrane, vacuole	47.51	44.59
Solyc06g048720.1.1	Tomato	endoplasmic reticulum, extracellular	9.94	43.86
HORVU7Hr1G042740.2	Barley	plastid	56.86	42.69
AT1G23880.1	Thale cress	plasma membrane	46.12	42.57
CDY09894	Canola	golgi, plasma membrane	36.98	40.17
CDX69553	Canola	plasma membrane	36.98	40.17
AT5G14890.1	Thale cress	plasma membrane	38.37	40.04
Bra008732.1-P	Field mustard	plasma membrane	36.58	39.74
GSMUA_Achr7P13840_001	Banana	golgi	29.82	31.45

Protein Annotations

EnsemblPlants:GSMUA_Achr10P01880_001	EnsemblPlants:GSMUA_Achr10T01880_001	EnsemblPlantsGene:GSMUA_Achr10G01880_001	Gene3D:2.120.10.30	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	PANTHER:PTHR13833	PANTHER:PTHR13833:SF59	SEG:seg
SignalP:SignalP-TM	SUPFAM:SSF101898	TMHMM:TMhelix	UniParc:UPI0002949EA4	UniProt:M0REL5	MapMan:35.2

Description

NHL repeat-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G01880_001]

Coordinates

chr10:+:4376879..4382198

Molecular Weight (calculated)

56441.5 Da

IEP (calculated)

8.270

GRAVY (calculated)

-0.269

Length

503 amino acids

Sequence
(BLAST)

001: MLILLLILSS GFSSASAASP ASWCSSWSIV WSWFACLYCI ANSFFRVVVL AEIVGVAVSD AASALLKRFW SLKSTTKTAV SGHRPLMKFE SGYTVQTVFD
101: GSKLGIEPYS VEMTQSGELL LLDSVNSNLY RFPLPLSRYS RPKLIAGSPE GYVGHIDGRP CEARMNHPKG FTVDERGNIY VADTMNMAIR KISDAGVTTI
201: AGGKWSRGGH LDGPSEDAKF SNDFEVIYIA SSCSLLVVDR GNQAIREIQL NFDDCAHQYE TGFPLGTAVL LAAGFFGYML ALLQRRLGTM VSNQNEHQTL
301: TKASMSPYQK PIKPSIRSPL IPTGDEAVHM DEEGLFSLIG KLLLAIAEIF GAMFPIFRKR SKTKYHHHHQ QQQQRANTRS VPGSLAIPDD EIPTPRKTYA
401: FMSKEPEKIH HIRHAPPYLM PQQQKQQVHQ QHHLQWNRQF SSGTETYYEQ SCEMMTNEIV FGAVQESDSK RRAVEMKAVN YGDPMFEQYG VRYRNHYISY
501: GDY

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.