Factsheet for Bra016227.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38803	Canola	plasma membrane, vacuole	97.27	97.84
Bra003957.1-P	Field mustard	plasma membrane	85.55	89.75
AT1G70280.2	Thale cress	plasma membrane	85.55	86.05
Bra024625.1-P	Field mustard	plasma membrane	68.75	70.54
VIT_01s0026g00330.t01	Wine grape	plasma membrane	62.5	65.17
KRG99307	Soybean	golgi	58.98	60.16
Solyc05g005760.2.1	Tomato	nucleus	57.81	59.2
PGSC0003DMT400010531	Potato	golgi	58.01	58.7
KRH74622	Soybean	plasma membrane	57.62	58.19
KRH69528	Soybean	vacuole	55.66	55.99
TraesCS6B01G322100.1	Wheat	plasma membrane	53.52	54.58
TraesCS6A01G291600.1	Wheat	plasma membrane	53.52	54.58
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	54.1	54.53
TraesCS6D01G272900.2	Wheat	plasma membrane	53.12	54.18
HORVU6Hr1G072950.14	Barley	golgi	53.71	53.4
KRH45706	Soybean	plasma membrane	43.36	52.73
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	49.41	52.38
Zm00001d017926_P003	Maize	golgi	50.98	51.18
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	51.17	50.78
EES07314	Sorghum	golgi, plasma membrane, vacuole	50.98	50.39
Os06t0269300-01	Rice	mitochondrion	50.78	50.29
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	49.22	50.1
EER89586	Sorghum	golgi, plasma membrane	46.48	46.94
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	46.29	46.65
Zm00001d045703_P002	Maize	plasma membrane	45.12	45.65
Bra008732.1-P	Field mustard	plasma membrane	40.23	44.49
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.46	43.47
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	47.66	43.34
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	47.27	42.46
HORVU7Hr1G042740.2	Barley	plastid	48.05	36.72
Bra001570.1-P	Field mustard	plastid	30.27	31.44
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	18.95	26.01

Protein Annotations

Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	EnsemblPlantsGene:Bra016227	EnsemblPlants:Bra016227.1	EnsemblPlants:Bra016227.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR011042	InterPro:IPR013017	UniProt:M4DIA0	InterPro:NHL_repeat	InterPro:NHL_repeat_subgr	PFAM:PF01436
PFscan:PS51125	PANTHER:PTHR13833	PANTHER:PTHR13833:SF42	SUPFAM:SSF101898	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000254198B	SEG:seg	:	:	:	:

Description

AT1G70280 (E=6e-211) | NHL repeat-containing protein

Coordinates

chrA07:-:18759724..18761792

Molecular Weight (calculated)

57108.7 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.585

Length

512 amino acids

Sequence
(BLAST)

001: MGRDFLLLGT LILLLSGFVS SAPSANSPAK IINGFISNHG SSLMKWIWSL KSTTTKTTIA TRSMVKFEDG YSVETVFDGS KLGIEPYSVE VLPNGELLVL
101: DSENSNIYKI SSSLSLYSRP RLVTGSPEGY AGHVDGRLRD ARLNHPKGLA VDDRGNIYVA DTVNNAIRKI SDGGVTTIAG GKTARNGGHV DGPSEDAKFS
201: NDFDVVYLGS SCSLLVIDRG NKAIREIQLH FDDCAYQYES GFPLGIAVLI AAGFFGYMLA LLQRRVGSIV SSQNVSVLDQ ETFEVDADQK PVKPFRPSLI
301: PNGDEQLVEK QDESFLASLG NLASNAWVTV TEMLRKKQQT ATSFEQYQTK QSSAAFSTST PWPIQESFVI PEEDEPPPVE HRNQTPRKTY AFMSKDAEKM
401: QQLRQSRAFY SSWEAAEFPN QQQQQQQQKQ QQKQQHRRHY SSIPHTYYEQ NSEKTNEIVF GAVQEKSSKR AAKPKESGDQ INNNNNNNNN TQQNLHYRAH
501: SVSYPYGYYP YT

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.