Factsheet for VIT_01s0026g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99307	Soybean	golgi	73.12	71.51
Solyc05g005760.2.1	Tomato	nucleus	67.82	66.6
KRH74622	Soybean	plasma membrane	68.43	66.27
PGSC0003DMT400010531	Potato	golgi	67.82	65.81
VIT_14s0066g01590.t01	Wine grape	golgi	66.6	65.14
AT1G70280.2	Thale cress	plasma membrane	67.01	64.64
CDY11605	Canola	endoplasmic reticulum, plasma membrane	63.75	64.4
Bra003957.1-P	Field mustard	plasma membrane	63.95	64.34
KRH45706	Soybean	plasma membrane	54.99	64.13
CDX68347	Canola	endoplasmic reticulum, plasma membrane	63.54	63.93
CDY23504	Canola	plasma membrane	64.15	63.77
KRH69528	Soybean	vacuole	65.99	63.65
Bra016227.1-P	Field mustard	plasma membrane, vacuole	65.17	62.5
VIT_13s0106g00480.t01	Wine grape	cytosol	9.37	62.16
CDY38803	Canola	plasma membrane, vacuole	64.36	62.08
CDY47647	Canola	plasma membrane	60.49	61.62
CDY59085	Canola	plasma membrane	58.86	60.84
Bra024625.1-P	Field mustard	plasma membrane	61.71	60.72
Os02t0730400-01	Rice	golgi, plasma membrane, vacuole	60.69	58.66
TraesCS6B01G322100.1	Wheat	plasma membrane	59.27	57.97
TraesCS6A01G291600.1	Wheat	plasma membrane	59.27	57.97
TraesCS6D01G272900.2	Wheat	plasma membrane	59.06	57.77
HORVU6Hr1G072950.14	Barley	golgi	59.88	57.09
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	57.23	55.86
Zm00001d017926_P003	Maize	golgi	57.84	55.69
GSMUA_Achr3P12850_001	Banana	endoplasmic reticulum	54.38	55.28
AT1G23880.1	Thale cress	plasma membrane	61.3	55.23
EES07314	Sorghum	golgi, plasma membrane, vacuole	58.25	55.21
Os06t0269300-01	Rice	mitochondrion	57.64	54.74
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	57.43	54.65
EER89586	Sorghum	golgi, plasma membrane	54.18	52.47
Zm00001d045703_P002	Maize	plasma membrane	52.75	51.19
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	52.75	50.98
VIT_13s0106g00460.t01	Wine grape	cytosol	15.07	50.0
TraesCS7B01G116500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	54.79	47.78
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	54.18	47.59
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	54.79	47.19
HORVU7Hr1G042740.2	Barley	plastid	55.4	40.6
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	32.18	32.64
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	21.59	24.2

Protein Annotations

EntrezGene:100263777	wikigene:100263777	Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	EMBL:AM449480
ProteinID:CAN69794	ProteinID:CAN69794.1	ProteinID:CBI32120	ProteinID:CBI32120.3	UniProt:D7TNP7	EMBL:FN596002
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR011042	EntrezGene:LOC100263777	wikigene:LOC100263777	InterPro:NHL_repeat	PFAM:PF01436	PANTHER:PTHR13833
PANTHER:PTHR13833:SF42	SUPFAM:SSF63829	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001982A0A	ArrayExpress:VIT_01s0026g00330
EnsemblPlantsGene:VIT_01s0026g00330	EnsemblPlants:VIT_01s0026g00330.t01	unigene:Vvi.21772	RefSeq:XP_002265467	RefSeq:XP_002265467.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:9035165..9038912

Molecular Weight (calculated)

54291.3 Da

IEP (calculated)

7.491

GRAVY (calculated)

-0.402

Length

491 amino acids

Sequence
(BLAST)

001: MGKSVLVLVL TLVVLSGGVS SASATASPAK IVTGFVSDAV PVVMKWLWSL KATTKTAISS RSMMKFESGY TVETVFDGSK LGIEPYSIEV LGSGELLILD
101: SANSNLYKIS SSLSQYTRPK LVTGSAEGYS GHVDGRLREA RMNHPKGLTV DDRGNIYVAD TLNMAIRKIS DAGVTTIAGG KLGRGGGHVD GPSEDAKFSN
201: DFDVVYIGSS CSLLVIDRGN QAIREIQLHF DDCAYQYGSG FPLGIAVLIA AGFFGYMLAL LQRRVGTIVS SENDQANPSI AHSTYQKPLK SVRPPLIPTE
301: DEMERQEEGF FGSLGKLFVY AGACIAEIFG GMIPGLKKKP HSYQYQNQQN YQQPQKHSNA WPLQESFVIP DEDEPPSIDT RTPTPRKTYP FMSKDAEKMH
401: QIRQSRAFVS GWDGDFQQQQ KQHHHRHYSS TPHTYYEQNC EKTNEIVFGA VQEQQVRREP VDIKPVNYGD PIYDHHNIRS RIHSKGYTQG Y

Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)

001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.