Factsheet for VIT_01s0026g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00480.t01	Wine grape	cytosol	8.22	48.65
CDY47648	Canola	extracellular	26.03	43.68
Solyc05g005770.2.1	Tomato	nucleus	38.81	42.71
AT1G23890.2	Thale cress	extracellular	37.67	41.25
PGSC0003DMT400010568	Potato	extracellular	36.99	40.4
KRH45709	Soybean	endoplasmic reticulum	35.39	38.75
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	32.19	37.8
VIT_13s0106g00460.t01	Wine grape	cytosol	12.56	37.16
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	31.51	37.0
Os08t0414600-01	Rice	extracellular	23.06	36.73
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	31.96	33.65
TraesCS2B01G153900.1	Wheat	extracellular, plasma membrane, vacuole	29.45	32.09
CDY25806	Canola	extracellular, plasma membrane, vacuole	12.79	31.64
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	29.68	31.1
TraesCS2A01G131500.2	Wheat	extracellular, golgi, plasma membrane	29.45	30.64
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	29.22	30.05
VIT_01s0026g00330.t01	Wine grape	plasma membrane	24.2	21.59
VIT_14s0066g01590.t01	Wine grape	golgi	23.97	20.92
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	22.6	20.45

Protein Annotations

EntrezGene:100243227	wikigene:100243227	Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	ProteinID:CCB56653
ProteinID:CCB56653.1	UniProt:F6HPM5	EMBL:FN596002	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR011042	EntrezGene:LOC100243227	wikigene:LOC100243227	PANTHER:PTHR13833	PANTHER:PTHR13833:SF71	SUPFAM:SSF101898
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001982A09	ArrayExpress:VIT_01s0026g00320	EnsemblPlantsGene:VIT_01s0026g00320	EnsemblPlants:VIT_01s0026g00320.t01
unigene:Vvi.11673	RefSeq:XP_002265272	RefSeq:XP_002265272.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:9031047..9034077

Molecular Weight (calculated)

48340.9 Da

IEP (calculated)

5.740

GRAVY (calculated)

0.017

Length

438 amino acids

Sequence
(BLAST)

001: MATYLQSLSL FIVFTIFTIA AIHGSADLVL EDGYTVRTVF DGNKLEINPH SILPRYGSSD FIILDSSKSV FYTVSSPLSQ ESEIKRLSGS SAGFSDGDSA
101: SATFSKPRSF AVDLKGNVYV ADQSNGVIRK ITNRGVTTTI AGGYAQKTGK VDGPAQNASF SKDFELVFVP EKCAVLVSDR GSQLVRQIDL KVEDCRRSPQ
201: SVLGGAFLWV LLGLGVSCLV GFIVGIISRP YVIPQEVFCP LFFSETWKHC LIHLGKQVLM LCFDIRSVIA SSMFYALLRR LISLSLSHLS LMFRINIVES
301: QFSRKESVSL LDSDDSCISE PTIPQMFEDQ LKDLASFDRS LQLPDTSSKI FMQKKSHRFA DQLEDLLTFD GSSELSNTTD RIFKEGDDDQ GKRDISPETC
401: GRIESMIEAN FMGFVEQAKV TTPVELCSSG NTGLVKRR

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.