Factsheet for VIT_13s0106g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00480.t01	Wine grape	cytosol	47.97	95.95
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	87.84	26.86
Solyc07g062300.2.1	Tomato	plasma membrane	77.7	24.01
PGSC0003DMT400018285	Potato	endoplasmic reticulum	77.7	24.01
GSMUA_Achr7P13840_001	Banana	golgi	77.03	23.9
KRH21938	Soybean	vacuole	78.38	23.06
AT3G14860.2	Thale cress	plastid, vacuole	73.65	22.11
CDX82461	Canola	endoplasmic reticulum	71.62	21.59
Bra001570.1-P	Field mustard	plastid	71.62	21.5
CDX75794	Canola	plastid	71.62	21.5
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	68.92	20.69
OQU84683	Sorghum	golgi	68.92	20.61
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	67.57	20.28
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	67.57	20.28
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	67.57	20.28
Zm00001d016228_P001	Maize	plasma membrane	68.24	19.61
KRH27368	Soybean	plastid	56.08	19.35
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	67.57	18.9
VIT_14s0066g01590.t01	Wine grape	golgi	52.7	15.54
VIT_01s0026g00330.t01	Wine grape	plasma membrane	50.0	15.07
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	37.16	12.56

Protein Annotations

ArrayExpress:VIT_13s0106g00460	EMBL:FN596257	EnsemblPlants:VIT_13s0106g00460.t01	EnsemblPlantsGene:VIT_13s0106g00460	Gene3D:2.120.10.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat	PANTHER:PTHR13833
PANTHER:PTHR13833:SF73	PFAM:PF01436	ProteinID:CCB58755	ProteinID:CCB58755.1	SUPFAM:SSF101898	UniParc:UPI0002109C49
UniProt:F6HVP2	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr13:-:10078403..10078926

Molecular Weight (calculated)

15990.0 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.243

Length

148 amino acids

Sequence
(BLAST)

001: MEGNELGVVS HSIWVSEDGE LFVVDAVKNN IVRITPPLSQ YSKARLIAGS FQGHTGHVDG KPSDIRFNGP KGVTMDDKEN VYVADSSNLA IRKIGDSGVT
101: IIVGGKSNVA RYGNGPREDA KFSRNFDVVY VRPTCTLLVV DRGNAALR

Best Arabidopsis Sequence Match ( AT3G14860.1 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.