Factsheet for Bra001570.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82461	Canola	endoplasmic reticulum	90.87	91.24
VIT_13s0106g00480.t01	Wine grape	cytosol	12.58	83.78
VIT_13s0106g00460.t01	Wine grape	cytosol	21.5	71.62
AT3G14860.2	Thale cress	plastid, vacuole	62.07	62.07
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	50.91	51.86
Solyc07g062300.2.1	Tomato	plasma membrane	49.49	50.94
KRH21938	Soybean	vacuole	51.72	50.7
PGSC0003DMT400018285	Potato	endoplasmic reticulum	48.88	50.31
GSMUA_Achr7P13840_001	Banana	golgi	47.87	49.48
KRH27368	Soybean	plastid	41.18	47.32
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.62	44.62
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	44.62	44.62
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	44.22	44.22
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.81	43.81
OQU84683	Sorghum	golgi	43.2	43.03
Zm00001d016228_P001	Maize	plasma membrane	43.41	41.55
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	44.02	41.02
Bra003957.1-P	Field mustard	plasma membrane	31.03	31.35
Bra016227.1-P	Field mustard	plasma membrane, vacuole	31.44	30.27
Bra024625.1-P	Field mustard	plasma membrane	30.22	29.86
Bra008732.1-P	Field mustard	plasma membrane	26.57	28.29
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	20.28	26.81

Protein Annotations

EnsemblPlants:Bra001570.1	EnsemblPlants:Bra001570.1-P	EnsemblPlantsGene:Bra001570	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat	PANTHER:PTHR13833	PANTHER:PTHR13833:SF73
PFAM:PF01436	SEG:seg	SignalP:SignalP-TM	SUPFAM:SSF101898	TMHMM:TMhelix	UniParc:UPI00025409DE
UniProt:M4CBJ0	MapMan:35.2	:	:	:	:

Description

AT3G14860 (E=6e-202) | NHL repeat-containing protein

Coordinates

chrA03:-:17131313..17133426

Molecular Weight (calculated)

54449.9 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.534

Length

493 amino acids

Sequence
(BLAST)

001: MGESQILSFS WSFKTLYTLS IVLFTLLHTF PFQAQAAPPA GSLIKHMSSV LKWTTGSSSK TSSQSETANV VQFENGYLVE TVVEGNEIGA LPYKIRVSDD
101: GELYAVDEVN SNIIKITPPL SHYSRGRLVA GSFQGKTGHA DGKPNEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN VAGFRDGPSE
201: DAKFSNDFDL VYVRPTCSLL VIDRGNAALR QISLAEEDCE YHSSSISSTD ILLVIGAVVI GYATCLLQQG FGHSFVSKMS EISFEEEQSG KEKLSRPVLE
301: TTTTTTAKEE PGWPSFGQLL IDLCKLALEF FTSNLVPARF KTSANLRPLK DRLKMPEDEQ EPPLVQRHTA PAPISESRHA HLPKQSDTYP EHKPSKTRSS
401: SATKDPSSKH HRSSSSKRQE YAQFYASGEV VQPPKVHKER SRRRHRDKTT ETAEPKTTAS SDTVKPVEYS NSSKFDHFNM RSSKYGPETP FRF

Best Arabidopsis Sequence Match ( AT3G14860.1 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.