Factsheet for Zm00001d016228_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84683	Sorghum	golgi	78.83	82.02
VIT_13s0106g00480.t01	Wine grape	cytosol	10.87	75.68
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	69.13	72.21
VIT_13s0106g00460.t01	Wine grape	cytosol	19.61	68.24
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	64.27	67.14
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	63.88	66.73
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	62.91	65.72
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	63.88	62.19
GSMUA_Achr7P13840_001	Banana	golgi	54.95	59.33
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	44.66	47.52
Solyc07g062300.2.1	Tomato	plasma membrane	42.33	45.51
PGSC0003DMT400018285	Potato	endoplasmic reticulum	41.75	44.89
KRH21938	Soybean	vacuole	43.5	44.53
Bra001570.1-P	Field mustard	plastid	41.55	43.41
CDX82461	Canola	endoplasmic reticulum	40.97	42.97
CDX75794	Canola	plastid	40.78	42.6
AT3G14860.2	Thale cress	plastid, vacuole	39.03	40.77
KRH27368	Soybean	plastid	33.79	40.56
Zm00001d017926_P003	Maize	golgi	28.35	28.63
Zm00001d051759_P001	Maize	golgi, plasma membrane, plastid	28.35	28.29
Zm00001d045703_P002	Maize	plasma membrane	27.18	27.67
Zm00001d037307_P001	Maize	plasma membrane, plastid, vacuole	26.8	27.17
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	18.64	22.97

Protein Annotations

Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	UniProt:A0A1D6H6B9	ProteinID:AQK70340.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011042
InterPro:NHL_repeat	PFAM:PF01436	PANTHER:PTHR13833	PANTHER:PTHR13833:SF73	SUPFAM:SSF101898	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0008426FA7	EnsemblPlantsGene:Zm00001d016228	EnsemblPlants:Zm00001d016228_P001	EnsemblPlants:Zm00001d016228_T001	SEG:seg

Description

NHL domain-containing protein

Coordinates

chr5:-:151137109..151142706

Molecular Weight (calculated)

55544.1 Da

IEP (calculated)

8.988

GRAVY (calculated)

-0.298

Length

515 amino acids

Sequence
(BLAST)

001: MGLRSPLVLL LLLLFLAATF RPSAAALAPP TGSIVKQLSS VVRWPRAAPS THGPKQPGHP QYADGHVGVA LQFESGYFVE TLVEGDKLGV TPHTVRVSPV
101: EGGELLAVDS AHSNIVRITP PLSEYSRGRL VAGSFQGHSG HIDGKPSDAR FKRPTGVAVD DMGNVYVADT ANLAIRKIGE SGVTTIAGGK SNIPGYRDGP
201: SEDAKFSTDF DVVYVKKMCS LLVIDRGNAA LRKISLPQED CTYQDSALLS SVPYFIINFV LFIYIDLILV IGAVVAGYIF SGFQHGFGFS GSEKVEAPEN
301: EQHESSTIGK PPLVVESLKE EPGAGWPSLG TLIADLLKLA IEGVGKLLLS VVPQRMQHGK RKTDLTPLRD RLVMPEDREE TAAAAQKLSS TPMRPETAHA
401: PNPVTETAAP KAPKSTKPSK LRDSSTLSSK HRSSKRQEYA DFYGTSEPAP VGAAAKVPKD RLRHRHHHRE KSGEVAYGAA HHDLKPAEAK PADYSDPSYD
501: PYVRSKYAAE SGYRY

Best Arabidopsis Sequence Match ( AT3G14860.2 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.