Factsheet for AT3G14860.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 3
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	endoplasmic reticulum, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00480.t01	Wine grape	cytosol	12.78	85.14
VIT_13s0106g00460.t01	Wine grape	cytosol	22.11	73.65
CDX75794	Canola	plastid	67.55	67.55
CDX82461	Canola	endoplasmic reticulum	62.88	63.14
Bra001570.1-P	Field mustard	plastid	62.07	62.07
Solyc07g062300.2.1	Tomato	plasma membrane	51.12	52.61
PGSC0003DMT400018285	Potato	endoplasmic reticulum	50.71	52.19
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	50.1	51.03
KRH21938	Soybean	vacuole	50.3	49.3
KRH27368	Soybean	plastid	41.78	48.02
GSMUA_Achr7P13840_001	Banana	golgi	44.83	46.33
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	41.99	41.99
OQU84683	Sorghum	golgi	41.78	41.62
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	41.18	41.18
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	40.97	40.97
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	39.96	39.96
Zm00001d016228_P001	Maize	plasma membrane	40.77	39.03
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	40.57	37.81
AT1G70280.2	Thale cress	plasma membrane	31.44	30.45
AT5G14890.1	Thale cress	plasma membrane	26.37	26.97
AT1G23880.1	Thale cress	plasma membrane	29.61	26.79
AT1G23890.2	Thale cress	extracellular	20.69	25.5

Protein Annotations

Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	EntrezGene:820715	UniProt:A0A178VB72	ProteinID:AEE75578.1
ArrayExpress:AT3G14860	EnsemblPlantsGene:AT3G14860	RefSeq:AT3G14860	TAIR:AT3G14860	RefSeq:AT3G14860-TAIR-G	EnsemblPlants:AT3G14860.2
TAIR:AT3G14860.2	Unigene:At.39155	UniProt:F4IXC9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	InterPro:IPR011042	InterPro:NHL_repeat	RefSeq:NP_974315.1	ProteinID:OAP02222.1	PFAM:PF01436
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PANTHER:PTHR13833	PANTHER:PTHR13833:SF73	SUPFAM:SSF101898	TMHMM:TMhelix	UniParc:UPI000034EF37
SEG:seg	:	:	:	:	:

Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]

Coordinates

chr3:-:4998304..5001046

Molecular Weight (calculated)

54958.5 Da

IEP (calculated)

7.475

GRAVY (calculated)

-0.602

Length

493 amino acids

Sequence
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.