Factsheet for TraesCS6D01G181800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	97.57	97.57
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	95.13	95.13
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	88.84	82.8
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	77.69	77.69
VIT_13s0106g00480.t01	Wine grape	cytosol	11.16	74.32
VIT_13s0106g00460.t01	Wine grape	cytosol	20.28	67.57
OQU84683	Sorghum	golgi	66.73	66.46
Zm00001d016228_P001	Maize	plasma membrane	67.14	64.27
GSMUA_Achr7P13840_001	Banana	golgi	59.03	61.01
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	47.26	48.14
KRH21938	Soybean	vacuole	47.46	46.52
Solyc07g062300.2.1	Tomato	plasma membrane	45.03	46.35
PGSC0003DMT400018285	Potato	endoplasmic reticulum	44.42	45.72
Bra001570.1-P	Field mustard	plastid	44.62	44.62
CDX82461	Canola	endoplasmic reticulum	44.02	44.2
CDX75794	Canola	plastid	43.0	43.0
KRH27368	Soybean	plastid	37.32	42.89
AT3G14860.2	Thale cress	plastid, vacuole	40.97	40.97
TraesCS6D01G272900.2	Wheat	plasma membrane	30.43	29.88
TraesCS7D01G211500.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	28.8	25.4
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	17.85	20.66

Protein Annotations

EnsemblPlants:TraesCS6D01G181800.1	EnsemblPlantsGene:TraesCS6D01G181800	Gene3D:2.120.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	InterPro:NHL_repeat	PANTHER:PTHR13833	PANTHER:PTHR13833:SF73	PFAM:PF01436
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6D:+:209920816..209935080

Molecular Weight (calculated)

53476.4 Da

IEP (calculated)

8.807

GRAVY (calculated)

-0.393

Length

493 amino acids

Sequence
(BLAST)

001: MRLGSMPVLS LFVNALPLFV VLRSDANAFA TPTDNIVRQL SSVVKWPRGS PPHSPKQSSH PQYDGNVAVQ FESGYFVETL VEGDKLGVTP HTIRVSPVEG
101: GELLAVDSAH SNIVRITPPL SEYSRGRLVA GSFQGHAGHI DGKPIDARFK RPTGVAVDDT GNVYIADTAN LAIRKIGESG VTTIAGGKSN IPGYRDGPSE
201: DAKFSTDFDV VYVKKMCSLL VIDRGNAALR KIVLPQEDCT YQDAAFLSSD IILVIGAVVA GYLFSVVQHG FGSSTSEKIE ASEDGKQESS TAGKPPLVVE
301: SLKEEPSAGW PSLGTLVADL LKLAVEGVGN LVLNIAPLHM QRVKRKTGLT PLKDRLVMPE DREENPVAQK LSSTPMITET LHAPSAANET VAKAQKSIKS
401: SKFRDSTLSS KHRSTKRQEY AEFYGSTETP QASAKVPKDR LRHRHREKSG EVTYGTGHPE PKPSEMKAAD YSDPKYDHYN MRSKYGADSG FRY

Best Arabidopsis Sequence Match ( AT3G14860.2 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.