Factsheet for PGSC0003DMT400018285

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g062300.2.1	Tomato	plasma membrane	97.7	97.7
VIT_13s0106g00480.t01	Wine grape	cytosol	12.53	81.08
VIT_13s0106g00460.t01	Wine grape	cytosol	24.01	77.7
VIT_19s0014g01010.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	57.62	57.02
GSMUA_Achr7P13840_001	Banana	golgi	53.03	53.25
KRH21938	Soybean	vacuole	53.65	51.09
AT3G14860.2	Thale cress	plastid, vacuole	52.19	50.71
Bra001570.1-P	Field mustard	plastid	50.31	48.88
CDX75794	Canola	plastid	50.31	48.88
CDX82461	Canola	endoplasmic reticulum	49.9	48.68
OQU84683	Sorghum	golgi	46.56	45.05
Os02t0234200-01	Rice	endoplasmic reticulum, golgi, plasma membrane	45.93	44.62
TraesCS6D01G181800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	45.72	44.42
TraesCS6B01G235400.1	Wheat	endoplasmic reticulum	45.51	44.22
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.68	43.41
KRH27368	Soybean	plastid	38.83	43.36
Zm00001d016228_P001	Maize	plasma membrane	44.89	41.75
HORVU6Hr1G045970.15	Barley	endoplasmic reticulum, plasma membrane	44.26	40.08
PGSC0003DMT400001332	Potato	golgi	29.65	28.23
PGSC0003DMT400010531	Potato	golgi	28.81	27.27
PGSC0003DMT400010568	Potato	extracellular	18.37	21.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400018285	EnsemblPlantsGene:PGSC0003DMG400007097	EntrezGene:102584279	Gene3D:2.120.10.30	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042
PANTHER:PTHR13833	PANTHER:PTHR13833:SF73	PGSC:PGSC0003DMG400007097	RefSeq:XP_006348319.1	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF101898	UniParc:UPI000296B2E3	UniProt:M1AAD1	MapMan:35.2	:	:

Description

NHL repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007097]

Coordinates

chr7:-:52465875..52469951

Molecular Weight (calculated)

52670.5 Da

IEP (calculated)

8.868

GRAVY (calculated)

-0.376

Length

479 amino acids

Sequence
(BLAST)

001: MRNSFLFFSL IAFFIAHLQF QVHAAAPAGP LIKHLNSILK WSRSTSKTPQ SDGNFLHFEE GYLVETVVEG NELGVVPYKI RVSEDGELFA VDAINSKIVR
101: ITPPLSQYSR ARLVAGSFQG HTGHVDGKPS DARFKNPKGA TMDDKGNIYV ADTSNLAIRK IGEAGVTTIA GGKSNVPGYR DGPSEDAQFS SDFDVIYVRP
201: TCSLLVVDRG NAALRQISLS QEDCDYQYSS VSTIDVLMVI GAIIIGYAAC MLQQGFGSKT QVRVEVEQQE PSLLKEKPTP VVETVKDEQE AGWPSFGQLL
301: WDLAKLAIEG LGSLFGYAVP LRLRHKSFIR PGLTPLKDSL IMPEDEVQPP LVQKQRAPAP ASEISHVPAV GDKVVPEGKP TKIRSSSSKD PNLSTKHRSS
401: RRHEYAEYYG ASGEVPSFVH VRSKSQKERT KHRRHDSSVG AAGVETKPAD QTKAVNYEDP KFALYSMRNK YGDSFPRYA

Best Arabidopsis Sequence Match ( AT3G14860.2 )
(BLAST)

001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT QVGSETSYEE EHPGKEKLSR
301: PVHEKTITKE EPGWPSFGQL LTDLCKLALE FITSHLVPAR FQTNPNLRPL KDRLIMPEDE QEPPRVQRHT APAPISESRH AHLPKADDSY PEHKTPKLRS
401: SSVMKDPTLS SSKHHRTSSK RQDYAQFYAS GEVAQPKIHK ERSRRRHRDK TTETEPKPTP SDTVKPVEYS NSSKFDHYNM RSSKYGPETP FRF

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.