Factsheet for PGSC0003DMT400010568

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005770.2.1	Tomato	nucleus	86.53	87.19
CDY47648	Canola	extracellular	26.93	41.38
AT1G23890.2	Thale cress	extracellular	37.16	37.25
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	40.4	36.99
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	32.17	34.58
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	31.67	34.05
CDY25806	Canola	extracellular, plasma membrane, vacuole	14.71	33.33
Os08t0414600-01	Rice	extracellular	22.44	32.73
KRH45709	Soybean	endoplasmic reticulum	32.42	32.5
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	29.18	28.12
TraesCS2B01G153900.1	Wheat	extracellular, plasma membrane, vacuole	28.18	28.11
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	29.18	27.99
TraesCS2A01G131500.2	Wheat	extracellular, golgi, plasma membrane	27.68	26.37
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	27.43	25.82
PGSC0003DMT400001332	Potato	golgi	23.44	18.69
PGSC0003DMT400018285	Potato	endoplasmic reticulum	21.95	18.37
PGSC0003DMT400010531	Potato	golgi	22.69	17.98

Protein Annotations

EntrezGene:102585637	Gene3D:2.120.10.30	MapMan:35.2	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011042	UniProt:M0ZY97
InterPro:NHL_repeat	PFAM:PF01436	EnsemblPlantsGene:PGSC0003DMG400004127	PGSC:PGSC0003DMG400004127	EnsemblPlants:PGSC0003DMT400010568	PANTHER:PTHR13833
PANTHER:PTHR13833:SF71	SUPFAM:SSF63829	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00029505AC	RefSeq:XP_006355969.1
SEG:seg	:	:	:	:	:

Description

NHL repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004127]

Coordinates

chr5:+:7667645..7671571

Molecular Weight (calculated)

44269.2 Da

IEP (calculated)

7.867

GRAVY (calculated)

0.064

Length

401 amino acids

Sequence
(BLAST)

001: MASLVSTFCV FFFFLFFNIS LTPVLGEVIF EDGYSVSTVI DGNKIKINPY SIIPVSGDTH FIILDSSAST FYTLSYNKDS DITVTKLTGN GIGYADGSLD
101: KAKFNKPRSF AVDSKGNIYV ADLKNMHAIR KISKSGVTTI AGGYSKTAGR ADGPGLNASF SDDYELSFIP KRCTLMISDH GNRLVREIQL KAEDCSRDSH
201: SDLRAVSTWL LTVGLPCLVC LIIGLVIRPY VIPNDHSSRL QHNMTWKHFL INLERQVLMF CFVIRSVIVD SKIYSLSRQL VLLSFSHLRL MFSPKVVVAR
301: QTSRRQLAPL INFHDFESKE SANSPVVASS LEDLITFDGS LDNSELTTNQ DDAVKESTDV SVVDSMILAN IKVFAEQGNA SSGPEVSKSI LSLVNQKKKV
401: N

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.