CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47648	Canola	extracellular	41.24	27.97
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	50.28	23.86
AT1G23890.2	Thale cress	extracellular	50.85	22.5
Os08t0414600-01	Rice	extracellular	28.25	18.18
KRH45709	Soybean	endoplasmic reticulum	33.9	15.0
Solyc05g005770.2.1	Tomato	nucleus	33.33	14.82
PGSC0003DMT400010568	Potato	extracellular	33.33	14.71
TraesCS2B01G153900.1	Wheat	extracellular, plasma membrane, vacuole	29.94	13.18
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	30.51	12.98
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	31.64	12.79
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	29.94	12.68
TraesCS2A01G131500.2	Wheat	extracellular, golgi, plasma membrane	29.94	12.59
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	29.38	12.21
CDY47647	Canola	plasma membrane	28.81	10.58
CDY59085	Canola	plasma membrane	28.25	10.53
CDX68347	Canola	endoplasmic reticulum, plasma membrane	28.25	10.25
CDX75794	Canola	plastid	27.68	9.94
CDY23504	Canola	plasma membrane	27.68	9.92
CDY11605	Canola	endoplasmic reticulum, plasma membrane	27.12	9.88
CDY38803	Canola	plasma membrane, vacuole	28.25	9.82
CDX82461	Canola	endoplasmic reticulum	26.55	9.57
CDX69553	Canola	plasma membrane	23.16	8.86
CDY09894	Canola	golgi, plasma membrane	22.03	8.42

Protein Annotations

EnsemblPlants:CDY25806	EnsemblPlantsGene:GSBRNA2T00033213001	Gene3D:2.120.10.30	GO:A0A078GK83	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	PANTHER:PTHR13833	PANTHER:PTHR13833:SF71	ProteinID:CDY25806
ProteinID:CDY25806.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE5E33	UniProt:A0A078GK83	MapMan:35.2

Description

BnaA07g09760DBnaA07g09760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK83]

Coordinates

chrLK032180:-:396966..397648

Molecular Weight (calculated)

19596.3 Da

IEP (calculated)

6.990

GRAVY (calculated)

0.666

Length

177 amino acids

Sequence
(BLAST)

001: MFTLGEVCNL FGACFCVGYV TTIAGGISNE FGHRDGPSHN ATFSSDFEIT FVPQRCCLLV SDHGNELILQ INLKEEDCLE ISHTSLGSYS LWSVGVVLSC
101: FLGIALLLAL TSLIMKKRIT TRFIMTWKLL LVIKLGEQVR TFFSYVRNLV AGSVLISLVM MLVSHLSLMY SAISRLD

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.