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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 6
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX69553 Canola plasma membrane 81.21 81.21
AT5G14890.1 Thale cress plasma membrane 74.3 71.37
VIT_14s0066g01590.t01 Wine grape golgi 52.27 48.21
PGSC0003DMT400001332 Potato golgi 49.03 45.13
Solyc02g087010.2.1 Tomato golgi 47.95 43.79
KRG93349 Soybean golgi, plasma membrane, vacuole 48.16 41.6
Os02t0730400-01 Rice golgi, plasma membrane, vacuole 45.57 41.54
TraesCS6B01G322100.1 Wheat plasma membrane 44.71 41.24
TraesCS6A01G291600.1 Wheat plasma membrane 44.71 41.24
CDY23504 Canola plasma membrane 43.84 41.09
TraesCS6D01G272900.2 Wheat plasma membrane 44.49 41.04
CDY11605 Canola endoplasmic reticulum, plasma membrane 42.76 40.74
Os06t0269300-01 Rice mitochondrion 45.36 40.62
CDX68347 Canola endoplasmic reticulum, plasma membrane 42.76 40.57
EES07314 Sorghum golgi, plasma membrane, vacuole 45.36 40.54
CDY38803 Canola plasma membrane, vacuole 44.49 40.47
Zm00001d051759_P001 Maize golgi, plasma membrane, plastid 44.92 40.31
Zm00001d017926_P003 Maize golgi 44.28 40.2
HORVU6Hr1G072950.14 Barley golgi 44.49 40.0
GSMUA_Achr3P12850_001 Banana endoplasmic reticulum 41.47 39.75
EER89586 Sorghum golgi, plasma membrane 43.41 39.65
CDY47647 Canola plasma membrane 40.82 39.21
CDY59085 Canola plasma membrane 39.74 38.74
Zm00001d045703_P002 Maize plasma membrane 42.33 38.74
Zm00001d037307_P001 Maize plasma membrane, plastid, vacuole 42.33 38.58
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 40.17 36.98
TraesCS7D01G211500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 43.2 35.78
TraesCS7B01G116500.1 Wheat endoplasmic reticulum, plasma membrane, plastid 43.41 35.7
TraesCS7A01G209600.1 Wheat endoplasmic reticulum, plasma membrane 43.41 35.26
HORVU7Hr1G042740.2 Barley plastid 43.84 30.3
CDY47648 Canola extracellular 16.85 29.89
CDX82461 Canola endoplasmic reticulum 28.29 26.68
CDX75794 Canola plastid 28.29 26.57
CDY59087 Canola endoplasmic reticulum, extracellular, plasma membrane 20.52 25.47
CDY25806 Canola extracellular, plasma membrane, vacuole 8.42 22.03
Protein Annotations
EnsemblPlants:CDY09894EnsemblPlantsGene:GSBRNA2T00031652001Gene3D:2.120.10.30GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:6-blade_b-propeller_TolB-likeInterPro:IPR011042InterPro:NHL_repeatPANTHER:PTHR13833PANTHER:PTHR13833:SF57PFAM:PF01436
ProteinID:CDY09894ProteinID:CDY09894.1SEG:segSignalP:SignalP-TMSUPFAM:SSF101898TMHMM:TMhelix
UniParc:UPI0004EEE017UniProt:A0A078FA62MapMan:35.2:::
Description
BnaC09g42670DBnaC09g42670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA62]
Coordinates
chrLK031999:+:885543..887981
Molecular Weight (calculated)
51901.5 Da
IEP (calculated)
7.357
GRAVY (calculated)
-0.497
Length
463 amino acids
Sequence
(BLAST)
001: MMKNGNWVVL SLIFLFLFCG LSSVSAKPPP VKIVSGLVTN VASMLWKWLW SLQTSTTTTA ATKSGVSSRS MVKYESGYNI ETVFDGNKLG IEPYAVEVSP
101: SGEELIVLDS ENSNIHKISM PLSRYGKPKL VSGSQEGYTG HVDGKLKEAK MNRPRGLAID DSGNIYVADT NNMAIRKISD AGVSTIATGG RFSDDFDLIY
201: VSSTCSLLVI DRGNQVIREI QLHDHDCSHH EPETDLHLGT ALLVAAAFFG YMFALLVRRV RSLFSSFGNN NKRHVAKPNM TMAPYQRYPR PVRQPLIPPQ
301: YEPENEEGFL GSLGKLVVKT GSSVSEMMTG PRKVTPQDFH YHHPQQPNQW PVQESFAIPE EDGPPALEPR SGSNPDKPYL RAQGTNQNWS YYQDCDQYQN
401: QKKRNVNNTD DNRENEIVFG AVQEQDGRRE AMVIKAVDFK EVMNDQRNIR PRINYMGYSS QVY
Best Arabidopsis Sequence Match ( AT5G14890.1 )
(BLAST)
001: MRKNANLLIL FMIFMFFFCG LSSVSAKPPP VKIVSGLVTN VASILWKWLW SLQTSTTTTT TTKSGVSSRS MVKYESGYNM ETVFDGSKLG IEPYAIEVSP
101: NGGELIVLDS ENSNIHKISM PLSRYGKPKL LSGSQEGYTG HVDGKLKEAR MNRPRGLAMD DRGNIYVADT INMAIRKISD DGVSTIAAGG RWSGGSKEES
201: MRFSDDFDLI YVSSSCSLLV IDRGNQLIKE IQLHDHDCSQ PEPDTDSLHL GTALLVAAVF FGYMLALLVR RVRSLFSSSS HDTKSKRHVA TPSMTMAPYQ
301: RYPRPVRQPL IPPQHESEKE EGFLGSLGKL VVKTGSSVSE MMSGSRNVIP PNFHQYHHQQ EPNQWPVQES FAIPEEDGPP ALEPRSGTNP DKPYLRAQGT
401: NQNRSYYQDY DQYQNQQKRN VNDTASFEDN REKNEIVFGA VQEQDGRREA MVIKAVDFNE AINDQRNLRP RINYMGYSSQ VY
Arabidopsis Description
NHL domain-containing protein [Source:TAIR;Acc:AT5G14890]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.