Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 3
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001570.1-P | Field mustard | plastid | 91.24 | 90.87 |
| CDX75794 | Canola | plastid | 88.19 | 87.83 |
| VIT_13s0106g00480.t01 | Wine grape | cytosol | 12.63 | 83.78 |
| VIT_13s0106g00460.t01 | Wine grape | cytosol | 21.59 | 71.62 |
| AT3G14860.2 | Thale cress | plastid, vacuole | 63.14 | 62.88 |
| VIT_19s0014g01010.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 51.53 | 52.27 |
| Solyc07g062300.2.1 | Tomato | plasma membrane | 49.29 | 50.52 |
| KRH21938 | Soybean | vacuole | 51.53 | 50.3 |
| PGSC0003DMT400018285 | Potato | endoplasmic reticulum | 48.68 | 49.9 |
| GSMUA_Achr7P13840_001 | Banana | golgi | 47.05 | 48.43 |
| KRH27368 | Soybean | plastid | 41.55 | 47.55 |
| TraesCS6D01G181800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 44.2 | 44.02 |
| TraesCS6B01G235400.1 | Wheat | endoplasmic reticulum | 43.99 | 43.81 |
| Os02t0234200-01 | Rice | endoplasmic reticulum, golgi, plasma membrane | 43.99 | 43.81 |
| TraesCS6A01G194600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 43.38 | 43.2 |
| OQU84683 | Sorghum | golgi | 42.77 | 42.42 |
| Zm00001d016228_P001 | Maize | plasma membrane | 42.97 | 40.97 |
| HORVU6Hr1G045970.15 | Barley | endoplasmic reticulum, plasma membrane | 43.79 | 40.64 |
| CDY47648 | Canola | extracellular | 18.74 | 35.25 |
| CDY11605 | Canola | endoplasmic reticulum, plasma membrane | 31.77 | 32.1 |
| CDX68347 | Canola | endoplasmic reticulum, plasma membrane | 31.77 | 31.97 |
| CDY23504 | Canola | plasma membrane | 31.57 | 31.38 |
| CDY59085 | Canola | plasma membrane | 30.14 | 31.16 |
| CDY38803 | Canola | plasma membrane, vacuole | 32.18 | 31.04 |
| CDY47647 | Canola | plasma membrane | 30.35 | 30.91 |
| CDY09894 | Canola | golgi, plasma membrane | 26.68 | 28.29 |
| CDX69553 | Canola | plasma membrane | 26.48 | 28.08 |
| CDY59087 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 20.57 | 27.08 |
| CDY25806 | Canola | extracellular, plasma membrane, vacuole | 9.57 | 26.55 |
Protein Annotations
| EnsemblPlants:CDX82461 | EnsemblPlantsGene:GSBRNA2T00137599001 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:NHL_repeat | PANTHER:PTHR13833 | PANTHER:PTHR13833:SF73 | PFAM:PF01436 |
| ProteinID:CDX82461 | ProteinID:CDX82461.1 | SEG:seg | SUPFAM:SSF101898 | TMHMM:TMhelix | UniParc:UPI0004EE7708 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA03g33600D
Coordinates
chrLK031828:+:1390844..1393263
Molecular Weight (calculated)
54366.7 Da
IEP (calculated)
8.308
GRAVY (calculated)
-0.556
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESQILSFY WSFKTLYTLS IVLFTLLHSF PFQAQAAPPA GSLIKHMSSV LKWTTGSSSK TSSQSETANV VQFENGYLVE TVVEGNEIGS LPYKIRVSDD
101: GELYAVDEVN SNIIKITPPL SHYSRGRLVA GSFQGKTGHA DGKPNEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN VAGFRDGPSE
201: DAKFSNDFDL VYVRPTCSLL VIDRGNAALR QISLAEEDCE YHSSSISSTD ILLVIGAVVI GYATCLLQQG FGHSFVSKTS EISFEEEQSG KEKLSRPVLE
301: TTTTTAKEEP GWPSFGQLLI DLCKLALEFF TSNLVPARFK TSANLRPLKD RLKMPEDEQE PPLVQRHTAP APISESRHAH LPKQSDTYPE HKPSKTRSSS
401: ATKDPSSKHH RSSSSKRQEY AQFYASGEVV QPPKVHKERS RRRHRDKTTE TEPKTTTASD TVKPVEYSNS SKFDHFNMRN SKYGPETPFR F
101: GELYAVDEVN SNIIKITPPL SHYSRGRLVA GSFQGKTGHA DGKPNEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN VAGFRDGPSE
201: DAKFSNDFDL VYVRPTCSLL VIDRGNAALR QISLAEEDCE YHSSSISSTD ILLVIGAVVI GYATCLLQQG FGHSFVSKTS EISFEEEQSG KEKLSRPVLE
301: TTTTTAKEEP GWPSFGQLLI DLCKLALEFF TSNLVPARFK TSANLRPLKD RLKMPEDEQE PPLVQRHTAP APISESRHAH LPKQSDTYPE HKPSKTRSSS
401: ATKDPSSKHH RSSSSKRQEY AQFYASGEVV QPPKVHKERS RRRHRDKTTE TEPKTTTASD TVKPVEYSNS SKFDHFNMRN SKYGPETPFR F
001: MGKSQILLNA ESFTCSSFNT FFTLWIFFTL HSFPFQAQAA PSGSLIKHMS SVLKWTTGSS SKLSQSDTNV LQFENGYLVE TVVEGNDIGV VPYKIRVSDD
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF
101: GELYAVDELN SNIMKITPPL SQYSRGRLVA GSFQGKTGHA DGKPSEARFN HPRGVTMDDK GNVYVADTLN LAIRKIGDSG VTTIAGGKSN IAGYRDGPSE
201: DAKFSNDFDV VYVRPTCSLL VIDRGNAALR QISLSEEDCD YQDDSSISLT DILLVIGAVL IGYATCMLQQ GFGNSFFSKT VGSETSYEEE HPGKEKLSRP
301: VHEKTITKEE PGWPSFGQLL TDLCKLALEF ITSHLVPARF QTNPNLRPLK DRLIMPEDEQ EPPRVQRHTA PAPISESRHA HLPKADDSYP EHKTPKLRSS
401: SVMKDPTLSS SKHHRTSSKR QDYAQFYASG EVAQPKIHKE RSRRRHRDKT TETEPKPTPS DTVKPVEYSN SSKFDHYNMR SSKYGPETPF RF
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IXC9]
SUBAcon: [plastid,vacuole]
SUBAcon: [plastid,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.