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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 6
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:golgi
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G322100.1 Wheat plasma membrane 86.61 87.65
TraesCS6A01G291600.1 Wheat plasma membrane 86.42 87.45
TraesCS6D01G272900.2 Wheat plasma membrane 85.83 86.85
HORVU6Hr1G072950.14 Barley golgi 86.42 85.24
EES07314 Sorghum golgi, plasma membrane, vacuole 82.28 80.69
Zm00001d017926_P003 Maize golgi 80.31 80.0
Zm00001d051759_P001 Maize golgi, plasma membrane, plastid 80.31 79.07
Os06t0269300-01 Rice mitochondrion 72.05 70.79
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, plastid 61.81 62.43
VIT_01s0026g00330.t01 Wine grape plasma membrane 58.66 60.69
KRH74622 Soybean plasma membrane 58.86 58.97
KRG99307 Soybean golgi 56.69 57.37
KRH69528 Soybean vacuole 56.89 56.78
Solyc05g005760.2.1 Tomato nucleus 54.72 55.6
PGSC0003DMT400010531 Potato golgi 54.33 54.55
AT1G70280.2 Thale cress plasma membrane 54.53 54.42
VIT_14s0066g01590.t01 Wine grape golgi 53.74 54.38
CDY11605 Canola endoplasmic reticulum, plasma membrane 51.97 54.32
Bra016227.1-P Field mustard plasma membrane, vacuole 54.53 54.1
CDY38803 Canola plasma membrane, vacuole 53.94 53.83
CDX68347 Canola endoplasmic reticulum, plasma membrane 51.57 53.69
Bra003957.1-P Field mustard plasma membrane 51.38 53.48
CDY23504 Canola plasma membrane 51.38 52.83
PGSC0003DMT400001332 Potato golgi 51.77 52.29
Solyc02g087010.2.1 Tomato golgi 51.77 51.87
KRH45706 Soybean plasma membrane 42.91 51.78
CDY59085 Canola plasma membrane 48.03 51.37
CDY47647 Canola plasma membrane 48.03 50.62
Bra024625.1-P Field mustard plasma membrane 49.61 50.5
KRG93349 Soybean golgi, plasma membrane, vacuole 52.36 49.63
Solyc10g018290.1.1 Tomato extracellular 8.07 47.67
Solyc10g018280.1.1 Tomato cytosol 6.5 46.48
AT1G23880.1 Thale cress plasma membrane 49.8 46.42
CDX69553 Canola plasma membrane 41.93 46.0
CDY09894 Canola golgi, plasma membrane 41.54 45.57
Bra008732.1-P Field mustard plasma membrane 41.54 45.57
AT5G14890.1 Thale cress plasma membrane 42.72 45.02
Solyc06g048720.1.1 Tomato endoplasmic reticulum, extracellular 9.25 41.23
Os08t0414600-01 Rice extracellular 18.7 34.55
Os02t0234200-01 Rice endoplasmic reticulum, golgi, plasma membrane 30.51 31.44
Protein Annotations
EMBL:AK101253EnsemblPlants:Os02t0730400-01EnsemblPlantsGene:Os02g0730400Gene3D:2.120.10.30GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:6-blade_b-propeller_TolB-likeInterPro:IPR011042PANTHER:PTHR13833PANTHER:PTHR13833:SF59ProteinID:BAD15926.1
ProteinID:BAD16365.1ProteinID:BAF09927.1ProteinID:BAS80743.1ProteinID:EAZ24497.1SEG:segSignalP:SignalP-noTM
SUPFAM:SSF101898TMHMM:TMhelixUniParc:UPI0000358BF6UniProt:Q6YWQ3MapMan:35.2:
Description
Six-bladed beta-propeller, TolB-like domain containing protein. (Os02t0730400-01);Hypothetical conserved gene. (Os02t0730400-02)
Coordinates
chr2:+:30427788..30431737
Molecular Weight (calculated)
55780.0 Da
IEP (calculated)
8.849
GRAVY (calculated)
-0.496
Length
508 amino acids
Sequence
(BLAST)
001: MEGGGRGGGP VVAALLLAAL LLAAVAPASA SSYPAKVVSG FLSNAASSVM KRLWSLKSTT KTGSGGKSMV KYEGGYTVET VFDGSKLGIE PYAVEVTQGG
101: ELLVMDSMNS NIYRIALPLS RYSRPKLVAG SPEGFPGHVD GRPREARMNH PKGFTVDGRG NIYVADAMNM AIRKISDTGV TTIAGGKSSR GGHVDGPSDD
201: AKFSTDFEVR YIGSSCSLLV IDRGNQAIRE IQLNFDDCVY QYEAGFPLGV AVLLAAAFFG YMLALLQRRV LGMVSTEDEP ETQTPLKASI ASIPPYQKPL
301: KQSVRPPLIP NEDESEKQEV EEGFFTSIGK LIVGAKSSVA EIVGAAFSRK KRLNIHQQQA RVRSWPVQES YAIPRDETPP PLDTRTPTPR KNYAFMSKEP
401: EKIHHIRHGR SQFNGWNGDA PQQQQQQQQQ QQIHHQQYLQ HHRQYSSGPQ TFYEPSCEAT NEIVFGAVQE VDSKRRAVEI KPMNHGDPQY DQDGLRHRSS
501: YTGYSNNW
Best Arabidopsis Sequence Match ( AT1G70280.2 )
(BLAST)
001: MGRDFLVLSI LILLLSGIVS SAPSANSPAK ILNGFISNHG SSLMKWLWSL KTTTKTTIAT RSMVKFENGY SVETVFDGSK LGIEPYSIEV LPNGELLILD
101: SENSNIYKIS SSLSLYSRPR LVTGSPEGYP GHVDGRLRDA KLNHPKGLTV DDRGNIYVAD TVNNAIRKIS EGGVTTIAGG KTVRNGGHVD GPSEDAKFSN
201: DFDVVYVGSS CSLLVIDRGN KAIREIQLHF DDCAYQYGSG FPLGIAVLVA AGFFGYMLAL LQRRVGSIVS SHNDQEMFEA DPDQKPMKHS RPSLIPAGDE
301: QLEKQEETFV VSLGKLVSNA WESVMEILRK KQTGTSFQQY HGTTKQSAAF STSTPWPIQE SFVIRDEDGP PPVEPRNPTP RKTYAFMSKD AEKMQQLRQS
401: RAFYSSWDAE FPNQQQQQQK QHQKHQHQQQ QQQQHRRHYS SIPHTYYEQD SEKSNEIVFG AVQEQSSKRV AKPKPKPIES GDQMNNNTQQ NLHYRSHSVS
501: YPYGYYPNT
Arabidopsis Description
NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I5D7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.