Factsheet for TraesCS2A01G131500.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G153900.1	Wheat	extracellular, plasma membrane, vacuole	78.62	82.34
TraesCS2D01G133600.2	Wheat	extracellular, golgi, plasma membrane	78.62	77.7
Os08t0414600-01	Rice	extracellular	34.92	53.45
EES13823	Sorghum	endoplasmic reticulum, golgi, plasma membrane	51.31	51.92
Zm00001d032308_P001	Maize	endoplasmic reticulum, extracellular, golgi	47.51	47.85
CDY47648	Canola	extracellular	23.75	38.31
AT1G23890.2	Thale cress	extracellular	29.93	31.5
Bra024626.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	27.08	30.56
CDY25806	Canola	extracellular, plasma membrane, vacuole	12.59	29.94
CDY59087	Canola	endoplasmic reticulum, extracellular, plasma membrane	26.37	29.76
VIT_01s0026g00320.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	30.64	29.45
Solyc05g005770.2.1	Tomato	nucleus	27.08	28.64
PGSC0003DMT400010568	Potato	extracellular	26.37	27.68
KRH45709	Soybean	endoplasmic reticulum	26.13	27.5
TraesCS6A01G291600.1	Wheat	plasma membrane	22.8	19.12
TraesCS7A01G209600.1	Wheat	endoplasmic reticulum, plasma membrane	23.75	17.54
TraesCS6A01G194600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	20.43	17.44

Protein Annotations

EnsemblPlants:TraesCS2A01G131500.2	EnsemblPlantsGene:TraesCS2A01G131500	Gene3D:2.120.10.30	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042	PANTHER:PTHR13833
PANTHER:PTHR13833:SF71	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF101898	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr2A:+:79160889..79163687

Molecular Weight (calculated)

44975.6 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.077

Length

421 amino acids

Sequence
(BLAST)

001: MASPPRVLLG HTLLLPVLPL LACAGLVLED GYTVSTVSDL NPIGTHPYAL LPRPRAGDLV LLDSAGSTLY TLPLPVSADA GPRRLARGAG AFGRGHPRSI
101: AVDGADNVYV ADRANGSVRK VAPSGYTTTI AGGYSAGTGH RDEPAQNATF SPDFELTYIP KICALLVADR GNRLIRQIKL KPEDCAHENQ KGLGTTSAST
201: IAILAALFGS IIGFLVRHFY PFHEVSINRF FSRIQRQYRR TQRKAALISC SDIRNAIANS MLSTVLLKLV RVSVGYLTVV LPSIRLERGV ACKPSPCPSP
301: CPSLLDLDMA GTTTPAIGLD NEALPSTELL GDFVGFDDSD SATDEGNESA FDGSATQDEN KEMSLDRDLW ALLDNPQGSS KKIDNMIEAN LSDFSGQDKY
401: CSPAVNYSGV SRRFHGGSKV L

Best Arabidopsis Sequence Match ( AT1G23890.2 )
(BLAST)

001: MAWGFSSVSL FLFVVFNLVS GKIVLEEGYE VTTVVDGHKS GLNPYTIHAL PGSSNLIVLD SSGSTFYTTS FPLSVDSVIN RFAGDGSSGH VDGKAGNSRF
101: SKPRGFAVDA KGNVYVADKS NKAIRKISSS GSVTTIAGGI SKAFGHRDGP AQNATFSSDF EITFVPQRCC LLVSDHGNEM IRQINLKEED CLENSHSNLG
201: TYSLWSIGIV LSCILGVAIG FAVRPYVIRH EEVNHLSFIM TWKLLLTKLG EQVLTFFSYI RNRVAESTVY SVLSRLVMMI VSHLSLMYSA LSSLICSMVS
301: SLFFMCQPNN VAILDKTVSV SDPESPGCGN PKPPLSLKPS DDLIDLISFD DEQEPNNDKD CRNEETLPHA TIDDIIKVHV EEFSKMAEED TVIHGSSSTE

Arabidopsis Description

NHL domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I7N5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.