Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 2
- cytosol 1
- plasma membrane 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67330.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT5G67330.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g092800.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 97.86 | 99.02 |
| KRH77065 | Soybean | plasma membrane | 73.4 | 74.56 |
| VIT_07s0129g00620.t01 | Wine grape | plasma membrane | 75.15 | 74.42 |
| KRH28413 | Soybean | plasma membrane | 73.01 | 74.31 |
| AT2G23150.1 | Thale cress | plasma membrane | 73.01 | 73.87 |
| KRH58028 | Soybean | plasma membrane | 72.82 | 72.67 |
| Bra000573.1-P | Field mustard | golgi, peroxisome, plasma membrane | 71.65 | 72.21 |
| KRH04493 | Soybean | peroxisome | 72.04 | 71.9 |
| AT5G67330.1 | Thale cress | plasma membrane | 71.26 | 71.68 |
| CDY57441 | Canola | peroxisome | 71.07 | 71.48 |
| Bra012154.1-P | Field mustard | peroxisome | 71.07 | 71.48 |
| CDX76871 | Canola | cytosol, peroxisome, plasma membrane | 71.26 | 71.26 |
| CDY21478 | Canola | plasma membrane | 69.51 | 71.17 |
| PGSC0003DMT400055473 | Potato | cytosol, peroxisome, plasma membrane | 72.43 | 69.07 |
| CDX83202 | Canola | plasma membrane | 69.9 | 66.91 |
| PGSC0003DMT400059923 | Potato | cytosol, peroxisome, plasma membrane | 65.63 | 65.25 |
| CDY12837 | Canola | nucleus | 71.07 | 54.95 |
| PGSC0003DMT400023921 | Potato | cytosol, peroxisome, plasma membrane | 38.84 | 37.74 |
| Bra039185.1-P | Field mustard | cytosol | 71.07 | 28.15 |
| PGSC0003DMT400055484 | Potato | plasma membrane | 18.64 | 7.38 |
Protein Annotations
| EntrezGene:102599421 | MapMan:24.2.3.10 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030001 | GO:GO:0046873 | UniProt:M1CC35 |
| HAMAP:MF_00221 | InterPro:NRAMP_fam | PFAM:PF01566 | EnsemblPlantsGene:PGSC0003DMG400024976 | PGSC:PGSC0003DMG400024976 | EnsemblPlants:PGSC0003DMT400064287 |
| PRINTS:PR00447 | PANTHER:PTHR11706 | PANTHER:PTHR11706:SF46 | TIGRFAMs:TIGR01197 | TMHMM:TMhelix | UniParc:UPI000296C4EF |
| RefSeq:XP_006339835.1 | : | : | : | : | : |
Description
Metal transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400024976]
Coordinates
chr2:-:43182874..43186847
Molecular Weight (calculated)
56813.7 Da
IEP (calculated)
5.439
GRAVY (calculated)
0.534
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLHDEEEHH QLLADRLLDS NEEESAYDYS DKVHIIGVDE EHDDDDFTKT PPFSWKKLWA FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY SLLWLLFWAT
101: AMGLLVQLLA ARLGVATSRH LAELCRDEYP KWARLLLWVM TELALIGADI QEVIGSAIAI KILSRGFLPL WSGVVITALD CFVFLFLENY GVRKLEALFA
201: VLIAVMAVSF AWIFGETKPN GVELLVGVVV PKLSSKTIKQ AVGIVGCVIM PHNVFLHSAL VQSRDIDNRK IGRVREALNY YSIESTIALA ISFMINLFVT
301: TVFAKSFYGS EIANSIGLEN AGQYLQDKYG GGSFPILYIW AIGLLAAGQS STITGTYAGQ FIMGGFLHMR LKKWQRALIT RSCAIVPTLI VALAFDTSEK
401: SLDVLNEWLN VLQCVQIPFA LIPLLCLVSR EEIMGVFKIG STMKVISWLV AVLVMLINGY LLMDSLSSAV SGMLFTSVVV AFTGAYIAFI VYLISRGVTF
501: PNWFVKNKSS SSIDN
101: AMGLLVQLLA ARLGVATSRH LAELCRDEYP KWARLLLWVM TELALIGADI QEVIGSAIAI KILSRGFLPL WSGVVITALD CFVFLFLENY GVRKLEALFA
201: VLIAVMAVSF AWIFGETKPN GVELLVGVVV PKLSSKTIKQ AVGIVGCVIM PHNVFLHSAL VQSRDIDNRK IGRVREALNY YSIESTIALA ISFMINLFVT
301: TVFAKSFYGS EIANSIGLEN AGQYLQDKYG GGSFPILYIW AIGLLAAGQS STITGTYAGQ FIMGGFLHMR LKKWQRALIT RSCAIVPTLI VALAFDTSEK
401: SLDVLNEWLN VLQCVQIPFA LIPLLCLVSR EEIMGVFKIG STMKVISWLV AVLVMLINGY LLMDSLSSAV SGMLFTSVVV AFTGAYIAFI VYLISRGVTF
501: PNWFVKNKSS SSIDN
001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH
Arabidopsis Description
NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.