CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
peroxisome 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67330.1	KRH11076	AT4G19030.1	21798944
AT5G67330.1	KRH21197	AT4G19030.1	21798944
AT5G67330.1	KRH42923	AT4G19030.1	21798944
AT5G67330.1	KRH42926	AT4G19030.1	21798944
AT5G67330.1	KRH45251	AT4G19030.1	21798944
AT5G67330.1	KRH59035	AT4G19030.1	21798944
AT5G67330.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04493	Soybean	peroxisome	96.32	96.32
KRH77065	Soybean	plasma membrane	81.98	83.43
KRH28413	Soybean	plasma membrane	81.78	83.4
VIT_07s0129g00620.t01	Wine grape	plasma membrane	78.68	78.08
AT2G23150.1	Thale cress	plasma membrane	75.0	76.03
Bra000573.1-P	Field mustard	golgi, peroxisome, plasma membrane	74.42	75.15
CDX76871	Canola	cytosol, peroxisome, plasma membrane	74.03	74.17
CDY21478	Canola	plasma membrane	72.29	74.16
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	72.87	73.87
AT5G67330.1	Thale cress	plasma membrane	72.29	72.85
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	72.67	72.82
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	73.06	72.78
Bra012154.1-P	Field mustard	peroxisome	72.09	72.66
CDY57441	Canola	peroxisome	72.09	72.66
KRH52059	Soybean	cytosol, nucleus, plasma membrane	72.67	71.84
CDX83202	Canola	plasma membrane	72.67	69.7
KRH47958	Soybean	cytosol, nucleus, plasma membrane	65.31	60.5
KRH06520	Soybean	cytosol, nucleus, plasma membrane	65.12	60.11
CDY12837	Canola	nucleus	72.09	55.86
KRH53274	Soybean	plastid	39.92	37.87
KRH09654	Soybean	plastid	39.53	37.36
KRH47347	Soybean	plasma membrane	39.34	37.25
KRH23641	Soybean	plastid	38.95	36.95
KRH44555	Soybean	mitochondrion	39.15	34.35
Bra039185.1-P	Field mustard	cytosol	73.84	29.31
KRH67695	Soybean	endoplasmic reticulum, plasma membrane, plastid	20.74	8.31
KRH32544	Soybean	plasma membrane	20.35	8.09
KRH19943	Soybean	plasma membrane	20.35	8.0

Protein Annotations

EntrezGene:100812381	MapMan:24.2.3.10	EMBL:ACUP02003190	EnsemblPlantsGene:GLYMA_05G101700	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	UniProt:I1K299	EnsemblPlants:KRH58028	ProteinID:KRH58028	ProteinID:KRH58028.1	HAMAP:MF_00221
InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197
TMHMM:TMhelix	UniParc:UPI000233A3E3	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:27055036..27059944

Molecular Weight (calculated)

56587.6 Da

IEP (calculated)

5.006

GRAVY (calculated)

0.571

Length

516 amino acids

Sequence
(BLAST)

001: MSRSHQEQPL LADSFIEEDE AQETAYDSSE KIVVVGVDES DNEDNWGRVP PFSWKKLWLY TGPGFLMSIA FLDPGNLEGD LQAGAIAGYS LLWLLMWATA
101: MGLLIQLLSA RLGVVTGKHL AELCREEYPP WARRVLWIMA ELALIGSDIQ EVIGSAIAIR ILSHGVVPLW AGVVITALDC FIFLFLENYG VRTLEAFFAV
201: LIGVMAISFA WMFGEAKPSG KELLLGVLIP KLSSKTIQQA VGVVGCLIMP HNVFLHSALV QSRQVDRSKK GRVQEALNYY SIESTLALVV SFIINIFVTT
301: VFAKGFYGSE LANSIGLVNA GQYLEETYGG GLFPILYIWG IGLLAAGQSS TITGTYAGQF IMGGFLNLRL KKWMRALITR SCAIFPTMIV ALIFDTSEES
401: LDVLNEWLNV LQSVQIPFAL IPLLCLVSKE QIMGTFRIGA VLKTTSWLVA ALVIVINGYL LTEFFSSEVN GPMIGAVVGA ITAAYVAFII YLIWRAITYL
501: PWQSVTQPKT IAHSAG

Best Arabidopsis Sequence Match ( AT2G23150.1 )
(BLAST)

001: MPQLENNEPL LINEEEEEET AYDETEKVHI VRNEEEDDLE HGVGCGGAPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL QAGAVAGYSL LWLLMWATAM
101: GLLVQLLSAR LGVATGRHLA ELCRDEYPTW ARMVLWVMAE LALIGSDIQE VIGSAIAIKI LSNGILPLWA GVVITALDCF VFLFLENYGI RKLEAVFAVL
201: IATMGVSFAW MFGQAKPSGS ELLIGILVPK LSSRTIQKAV GVVGCIIMPH NVFLHSALVQ SREVDKRQKY RVQEALNYYT IESTIALFIS FLINLFVTTV
301: FAKGFYNTDL ANSIGLVNAG QYLQEKYGGG VFPILYIWAI GLLAAGQSST ITGTYAGQFI MGGFLNFKMK KWLRALITRS CAIIPTIIVA LVFDSSEATL
401: DVLNEWLNVL QSIQIPFALI PLLCLVSKEQ IMGSFKIGPL YKTIAWLVAA LVIMINGYLL LEFFSNEVSG IVYTGFVTLF TASYGAFILY LIARGITFTP
501: WPFKAESSH

Arabidopsis Description

NRAMP3Metal transporter Nramp3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNV9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.