CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	95.59	96.33
AT1G47240.1	Thale cress	plasma membrane	78.16	76.98
CDY17036	Canola	cytosol, nucleus, plasma membrane	77.2	76.47
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	77.01	76.28
CDY47594	Canola	cytosol, nucleus, plasma membrane	77.01	76.28
CDY17090	Canola	cytosol, peroxisome, plasma membrane	76.82	75.23
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	76.44	75.0
KRH28413	Soybean	plasma membrane	71.84	74.11
KRH77065	Soybean	plasma membrane	71.84	73.96
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	76.44	73.89
KRH04493	Soybean	peroxisome	72.03	72.87
KRH58028	Soybean	plasma membrane	71.84	72.67
CDY06751	Canola	plasma membrane	57.28	71.36
GSMUA_Achr9P26850_001	Banana	plasma membrane	57.85	71.23
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	69.54	69.94
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	69.16	69.69
TraesCS5D01G084900.1	Wheat	plasma membrane	71.46	68.19
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	71.26	68.01
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	71.07	67.82
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	70.11	67.65
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	70.69	67.46
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	69.92	67.1
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	56.7	66.82
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	59.58	66.74
KRH06520	Soybean	cytosol, nucleus, plasma membrane	69.92	65.3
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	64.37	65.12
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	63.98	64.73
KRH47958	Soybean	cytosol, nucleus, plasma membrane	68.97	64.63
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	65.33	64.22
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	65.13	64.15
TraesCS4A01G237200.1	Wheat	cytosol, peroxisome, plasma membrane	65.13	64.03
Zm00001d030846_P001	Maize	plasma membrane	69.35	63.96
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	58.05	63.66
HORVU4Hr1G069320.1	Barley	vacuole	63.22	63.22
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	62.64	63.01
Os03t0208500-01	Rice	plasma membrane	63.22	62.98
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	62.64	62.76
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	65.52	62.64
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	62.45	62.57
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	64.37	62.22
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	65.13	61.93
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	22.61	54.63
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	22.8	54.59
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	11.69	49.59
KRH09654	Soybean	plastid	37.93	36.26
KRH47347	Soybean	plasma membrane	37.55	35.96
KRH23641	Soybean	plastid	37.36	35.85
KRH53274	Soybean	plastid	36.59	35.11
KRH44555	Soybean	mitochondrion	37.93	33.67
KRH67695	Soybean	endoplasmic reticulum, plasma membrane, plastid	21.26	8.62
KRH32544	Soybean	plasma membrane	20.88	8.4
KRH19943	Soybean	plasma membrane	21.07	8.38

Protein Annotations

EntrezGene:100795013	MapMan:24.2.3.10	EMBL:ACUP02003404	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G044200	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0030001	GO:GO:0046873	UniProt:I1K839	EnsemblPlants:KRH52059	ProteinID:KRH52059	ProteinID:KRH52059.1
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46
TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0002339D31	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:3362510..3366628

Molecular Weight (calculated)

57379.4 Da

IEP (calculated)

4.834

GRAVY (calculated)

0.479

Length

522 amino acids

Sequence
(BLAST)

001: MSAPSREEES KEEERDEEAN RLLEEEEEAE SSSEEGEKIL VADLEFDRVD DGSVPPPFSW KKLWLFTGPG FLMSIAFLDP GNLEGDLQAG AIAGYSLLWL
101: LMWATFMGLL IQLLSARVGV ATGRHLAELC RDEYPNWARL VLWFMAELAL IGADIQEVIG SAIAIQILSR GFFPLWAGVL ITASDCFFFL FLENYGVRKL
201: EAAFAVLIAV MGLSFAWMFG DAQPNRKELL MGILVPRLSS KTIRQAVGVV GCVIMPHNVF LHSALVQSRK VDPKKIGRVQ EALNYYSIES AAALAVSFMI
301: NLFVTTVFAK GFYGTKQADS IGLVNAGQYL EEKYGGGVFP ILYIWGIGLL AAGQSSTITG TYAGQFIMGG FLNLRLKKWL RALITRSFAI VPTIIVAIVF
401: NKSEGSLDVL NEWLNVLQSM QIPFALIPLL TLVSKEKIMG TFRVGPVLER VAWIVAGLIM IINGYLLLDF FVSEVNGILL GLLACSCTTA YIAFIVYLVS
501: QSGILPSAWV NRLPKGFSST GN

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.