Factsheet for Zm00001d048129_P004

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	96.51	96.51
Os03t0208500-01	Rice	plasma membrane	91.28	89.89
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	89.73	88.87
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	89.34	88.82
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	89.34	88.48
HORVU4Hr1G069320.1	Barley	vacuole	89.34	88.31
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	61.82	72.01
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	62.6	67.86
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	67.44	64.93
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	64.73	64.48
AT1G47240.1	Thale cress	plasma membrane	66.09	64.34
KRH52059	Soybean	cytosol, nucleus, plasma membrane	64.73	63.98
CDY47594	Canola	cytosol, nucleus, plasma membrane	65.31	63.95
CDY17036	Canola	cytosol, nucleus, plasma membrane	65.31	63.95
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	65.31	63.95
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.89	63.91
CDY17090	Canola	cytosol, peroxisome, plasma membrane	65.5	63.41
Zm00001d030846_P001	Maize	plasma membrane	69.38	63.25
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	65.5	62.59
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	62.4	62.16
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	64.73	61.85
CDY06751	Canola	plasma membrane	49.61	61.1
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	61.24	60.89
AT4G18790.1	Thale cress	plasma membrane	62.02	60.38
CDY62556	Canola	plasma membrane	61.63	59.77
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	61.63	59.77
CDY64917	Canola	cytosol, plasma membrane, plastid	61.43	59.7
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	18.02	57.06
KRH47958	Soybean	cytosol, nucleus, plasma membrane	59.11	54.76
KRH06520	Soybean	cytosol, nucleus, plasma membrane	59.11	54.56
Solyc04g078240.1.1	Tomato	cytosol	16.86	54.04
Zm00001d014391_P008	Maize	plasma membrane	37.98	35.64
Zm00001d034473_P001	Maize	endoplasmic reticulum, extracellular, vacuole	5.23	34.18
Zm00001d015133_P001	Maize	cytosol, peroxisome, plasma membrane	35.27	32.73
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	31.2	30.9
Zm00001d005479_P001	Maize	plasma membrane	35.08	30.89
Zm00001d007397_P003	Maize	cytosol, peroxisome, plasma membrane	26.94	24.43
Zm00001d033625_P015	Maize	plasma membrane	16.67	18.07
Zm00001d013492_P001	Maize	plasma membrane	16.09	14.93
Zm00001d039341_P126	Maize	plasma membrane	19.19	7.62

Protein Annotations

MapMan:24.2.3.10	ProteinID:AQL08913.1	UniProt:B8A0P9	EMBL:BT055141	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706
PANTHER:PTHR11706:SF51	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0001917304	EnsemblPlantsGene:Zm00001d048129	EnsemblPlants:Zm00001d048129_P004
EnsemblPlants:Zm00001d048129_T004	SEG:seg	:	:	:	:

Description

Metal transporter Nramp3

Coordinates

chr9:+:150529031..150532996

Molecular Weight (calculated)

56212.2 Da

IEP (calculated)

6.518

GRAVY (calculated)

0.564

Length

516 amino acids

Sequence
(BLAST)

001: MASSDLAESL LPGGGGGASA SHDEYEERAY DSEDKISIAV SDSDGEDDGT PASRPPFSWR KLWRFTGPGF LMCIAFLDPG NLEGDLQAGA AAGYQLLWLL
101: LWATIMGALM QLLSARLGVA TGKHLAELCR QEYPPWATRA LWAMTELALV GADIQEVIGS AIAIKILSGG AIPLWGGVVI TALDCFIFLF LENYGVRKLE
201: AFFAVLIATM AVSFAVMFGE TKPSGKELLI GLVVPKLSSK TIKQAVGIVG CIIMPHNVFL HSALVQSRKI DTNKKSRVLE AVYYYNIESI LALIVSFFIN
301: ICVTTVFAKG FYGSKQADSI GLENAGQYLQ EKYGTAFFPI LYIWAVGLLA SGQSSTITGT YAGQFVMGGF LNLRLKKWLR AMITRSFAII PTMIVALFFD
401: TEDPTMDILN EALNVLQSIQ IPFALIPLIT LVSKEQIMGS FVIGPITKVI SWIVTVFLML INGYLILSFY ITDVRGALLR SSLCVVLVVY LAFIVYLIVR
501: NTSLYSRLCS STSKSS

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.