Factsheet for Solyc04g078250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	90.56	87.04
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	69.56	69.69
KRH52059	Soybean	cytosol, nucleus, plasma membrane	69.94	69.54
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.68	69.4
AT1G47240.1	Thale cress	plasma membrane	68.98	67.55
CDY17036	Canola	cytosol, nucleus, plasma membrane	68.4	67.36
Solyc02g092800.2.1	Tomato	cytosol, peroxisome, plasma membrane	65.9	67.19
CDY47594	Canola	cytosol, nucleus, plasma membrane	68.21	67.17
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	68.02	66.98
CDY17090	Canola	cytosol, peroxisome, plasma membrane	68.21	66.42
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	67.63	65.98
GSMUA_Achr9P26850_001	Banana	plasma membrane	52.99	64.86
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	67.24	64.15
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	66.86	63.44
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	66.86	63.44
TraesCS5D01G084900.1	Wheat	plasma membrane	66.86	63.44
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	65.9	63.22
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	56.65	63.09
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	66.47	63.07
CDY06751	Canola	plasma membrane	50.1	62.05
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	61.27	61.63
HORVU4Hr1G069320.1	Barley	vacuole	61.66	61.3
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	60.89	61.24
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	61.08	61.08
CDY62556	Canola	plasma membrane	62.43	60.9
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	62.43	60.9
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	61.08	60.84
CDY64917	Canola	cytosol, plasma membrane, plastid	62.24	60.83
Zm00001d030846_P001	Maize	plasma membrane	66.28	60.78
Os03t0208500-01	Rice	plasma membrane	61.27	60.69
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	60.89	60.65
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	62.04	60.64
AT4G18790.1	Thale cress	plasma membrane	61.85	60.57
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	61.85	60.57
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	55.49	60.5
TraesCS4A01G237200.1	Wheat	cytosol, peroxisome, plasma membrane	61.85	60.45
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	51.45	60.27
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	18.69	59.51
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	62.43	59.02
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	61.08	58.7
KRH06520	Soybean	cytosol, nucleus, plasma membrane	63.2	58.68
KRH47958	Soybean	cytosol, nucleus, plasma membrane	62.62	58.35
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	61.08	58.06
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	22.35	53.7
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	21.58	51.38
Solyc04g078240.1.1	Tomato	cytosol	15.8	50.93
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	11.18	47.15
Solyc03g116900.2.1	Tomato	cytosol, peroxisome, plasma membrane	35.65	35.44
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	35.84	35.09
Solyc09g005490.1.1	Tomato	extracellular	6.17	25.2
Solyc09g007870.2.1	Tomato	plastid	18.3	7.22
Solyc09g005540.1.1	Tomato	cytosol, nucleus, vacuole	6.17	5.19

Protein Annotations

MapMan:24.2.3.10	GO:GO:0003674	GO:GO:0005215	GO:GO:0005384	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0010015	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016049	GO:GO:0030001	GO:GO:0030154	GO:GO:0040007	GO:GO:0046873
GO:GO:0048767	GO:GO:0051512	GO:GO:0071287	GO:GO:0071421	UniProt:K4BUR2	HAMAP:MF_00221
InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	EnsemblPlantsGene:Solyc04g078250.2
EnsemblPlants:Solyc04g078250.2.1	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0002766A28	:	:

Description

No Description!

Coordinates

chr4:-:63023436..63027801

Molecular Weight (calculated)

57149.7 Da

IEP (calculated)

5.036

GRAVY (calculated)

0.357

Length

519 amino acids

Sequence
(BLAST)

001: MSSPQQQENT SPDSKEEESR HLLTAPLPQS TSPLINGDAD DGEEEFVYGS GEKIHVVEFD SVPIDGVDYS TVPPFSWKKL WQFTGPGFLM SIAFLDPGNL
101: EGDLQAGAIA GYSLLWLLLW ATVMGLMIQL LSARIGVATG RHLAELCREE YPRWAGLLLW FMAEVALIGA DIQEVIGSAI AIKILSRGVL PLWAGVLITA
201: SDCFLLLVLE NYGIRKLEAV FAVLISTMAL SFAWMFGDAK PNGKELLAGL LIPKLSSRTV RQAVGVVGCV IMPHNVFLHS ALVQSREIDL KKKGQVQEAL
301: NYYSIESSFA LLISFMINLF VTTVFAKGFY GSEQAGSLGL VNAGQFLQDK YGGGLFPILY IWGIGLLAAG QSSTITGTYA GQFIMGGFLD LRLKKWLRAL
401: ITRSCAIVPT IIVALIFNRS ESSLDVLNEW LNVLQSIQIP FALIPLLTLV SKEDIMGTFK LCWSMRHLRQ YIQSNPDVVN IVNHYIAERP WPWGSLITEA
501: FFSSEEVPIS LCPNCHNSF

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.