Factsheet for PGSC0003DMT400055473

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	87.04	90.56
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	77.04	77.61
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	73.89	77.03
KRH52059	Soybean	cytosol, nucleus, plasma membrane	73.89	76.44
AT1G47240.1	Thale cress	plasma membrane	72.96	74.34
CDY17036	Canola	cytosol, nucleus, plasma membrane	72.04	73.81
CDY47594	Canola	cytosol, nucleus, plasma membrane	71.85	73.62
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	71.67	73.43
CDY17090	Canola	cytosol, peroxisome, plasma membrane	71.85	72.8
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	69.07	72.43
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	71.3	72.37
GSMUA_Achr9P26850_001	Banana	plasma membrane	55.19	70.28
CDY06751	Canola	plasma membrane	54.26	69.93
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	67.04	69.88
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	68.52	68.01
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	67.59	67.47
TraesCS5D01G084900.1	Wheat	plasma membrane	68.33	67.46
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	68.15	67.28
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	67.96	67.09
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	57.59	66.74
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	67.41	66.54
AT4G18790.1	Thale cress	plasma membrane	64.81	66.04
CDY62556	Canola	plasma membrane	65.0	65.98
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	65.0	65.98
CDY64917	Canola	cytosol, plasma membrane, plastid	64.81	65.91
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	53.52	65.24
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	62.22	65.12
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	57.22	64.92
Zm00001d030846_P001	Maize	plasma membrane	67.96	64.84
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	61.85	64.73
KRH06520	Soybean	cytosol, nucleus, plasma membrane	66.85	64.58
KRH47958	Soybean	cytosol, nucleus, plasma membrane	66.48	64.45
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	63.33	64.41
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	63.15	64.34
TraesCS4A01G237200.1	Wheat	cytosol, peroxisome, plasma membrane	63.15	64.22
HORVU4Hr1G069320.1	Barley	vacuole	62.04	64.18
Os03t0208500-01	Rice	plasma membrane	62.22	64.12
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	61.48	63.97
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	61.48	63.72
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	61.3	63.53
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	63.7	62.66
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	61.67	61.67
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	62.04	61.36
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	22.04	54.59
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	21.67	54.17
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	10.93	47.97
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	36.3	36.98
PGSC0003DMT400055484	Potato	plasma membrane	17.96	7.46

Protein Annotations

EntrezGene:102578842	MapMan:24.2.3.10	GO:GO:0003674	GO:GO:0005215	GO:GO:0005384	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0010015	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016049	GO:GO:0030001	GO:GO:0030154	GO:GO:0040007
GO:GO:0046873	GO:GO:0048767	GO:GO:0051512	GO:GO:0071287	GO:GO:0071421	UniProt:M1BXZ3
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	EnsemblPlantsGene:PGSC0003DMG400021539	PGSC:PGSC0003DMG400021539	EnsemblPlants:PGSC0003DMT400055473
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0002955B18
RefSeq:XP_006362075.1	:	:	:	:	:

Description

NRAMP2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021539]

Coordinates

chr4:-:67381079..67385266

Molecular Weight (calculated)

58848.1 Da

IEP (calculated)

5.017

GRAVY (calculated)

0.498

Length

540 amino acids

Sequence
(BLAST)

001: MSSPPQQENT SPDSKDEESR HLLTAPLPQS TSPLINGDAD DGEEEFAYGS GEKIHVVEFD SVPIDGVDYS TVPPFSWKKL WQFTGPGFLM SIAFLDPGNL
101: EGDLQAGAIA GYSLLWLLLW ATVMGLMIQL LSARIGVATG RHLAELCREE YPRWAGLLLW FMAEVALIGA DIQEVIGSAI AIKILSRGVL PLWAGVLITA
201: SDCFLLLVLE NYGIRKLEAV FAVLISTMAL SFAWMFGDAK PNGKELLAGL LIPKLSSRTV RQAVGVVGCV IMPHNVFLHS ALVQSREIDL KKKGQVQEAL
301: NYYSIESSFA LLISFMINLF VTTVFAKGFY GSEQAGSLGL VNAGQFLQDK YGGGLFPILY IWGIGLLAAG QSSTITGTYA GQFIMGGFLD LRLKKWLRAL
401: ITRSCAIVPT IIVALIFNRS ESSLDVLNEW LNVLQSIQIP FALIPLLTLV SKEDIMGTFK IGPTLERVAW TIAVLVMVIN GYLLLDFFVS EVNGLLFAFL
501: VCAGTAGYIA FILYLISHGG GNVANWFNLL RTKGYSYAGQ

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.