Factsheet for PGSC0003DMT400059923

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	69.5	69.5
KRH52059	Soybean	cytosol, nucleus, plasma membrane	69.69	69.16
GSMUA_Achr9P26850_001	Banana	plasma membrane	56.37	68.87
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	69.69	68.5
CDY17036	Canola	cytosol, nucleus, plasma membrane	69.69	68.5
CDY47594	Canola	cytosol, nucleus, plasma membrane	69.69	68.5
AT1G47240.1	Thale cress	plasma membrane	69.88	68.3
CDY17090	Canola	cytosol, peroxisome, plasma membrane	69.69	67.73
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.88	67.54
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.92	67.11
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	69.88	67.04
CDY06751	Canola	plasma membrane	53.09	65.63
PGSC0003DMT400064287	Potato	cytosol, nucleus, plasma membrane	65.25	65.63
AT4G18790.1	Thale cress	plasma membrane	66.22	64.72
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	58.11	64.59
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	54.63	63.88
CDY64917	Canola	cytosol, plasma membrane, plastid	65.44	63.84
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	65.44	63.72
CDY62556	Canola	plasma membrane	65.44	63.72
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	66.02	63.22
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	62.74	62.98
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	62.16	62.4
TraesCS5D01G084900.1	Wheat	plasma membrane	65.64	62.16
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	65.64	62.16
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	65.64	62.16
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	65.64	62.16
HORVU4Hr1G069320.1	Barley	vacuole	61.97	61.49
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	61.39	61.27
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	64.29	61.21
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	62.55	61.13
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	61.39	61.04
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	61.39	61.04
TraesCS4A01G237200.1	Wheat	cytosol, peroxisome, plasma membrane	62.55	61.02
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	62.36	60.83
Os03t0208500-01	Rice	plasma membrane	61.0	60.31
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	62.55	60.0
KRH06520	Soybean	cytosol, nucleus, plasma membrane	64.67	59.93
KRH47958	Soybean	cytosol, nucleus, plasma membrane	64.29	59.78
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	62.93	59.38
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	54.25	59.03
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	62.16	58.97
Zm00001d030846_P001	Maize	plasma membrane	63.71	58.3
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	22.59	53.67
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	21.04	50.46
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	11.0	46.34
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	36.29	35.47
PGSC0003DMT400055484	Potato	plasma membrane	19.5	7.76

Protein Annotations

EntrezGene:102602058	MapMan:24.2.3.10	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	UniProt:M1C4X1
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	EnsemblPlantsGene:PGSC0003DMG400023310	PGSC:PGSC0003DMG400023310	EnsemblPlants:PGSC0003DMT400059923
PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI00029527CE
RefSeq:XP_006368038.1	SEG:seg	:	:	:	:

Description

NRAMP2 [Source:PGSC_GENE;Acc:PGSC0003DMG400023310]

Coordinates

chr00:-:38584114..38587604

Molecular Weight (calculated)

57532.7 Da

IEP (calculated)

5.944

GRAVY (calculated)

0.454

Length

518 amino acids

Sequence
(BLAST)

001: MVNSPSSEHD GVVEINKHVP QDRESNRLLS DNDGDDDNDK NKILAIEIDR AEALDVVPHF SWKKLWEFTG PGFLMSVAFL DPGNLEGDLQ AGAIAGYSLL
101: WLLMWSTFMG LLIQLLSLRL GVATGRHLAE ICREEYPNWA RILLWLMAEV ALIGADIQEV IGSAIAIKIL SQGVIPLWGG VLITASDCFI FLFLENYGVR
201: KLEAFFAVLI STMALSFAWM FAETRPSSKE LIIGLLLPRL SSKTIQTAVG VVGCVITPHN VFLYSALVQS RKIDPKKKDK VQEALNYYSI EFYIAVFISF
301: SINLMVTAVF AKGFYGTSQA DSIGLVNAGQ YLQERYGGGF FPILYIWGIG LLAAGQSSTM TGTYAGQFIM EGFLNLRMKK WIRSVITRSC AIVPTIIVAI
401: YFNRSEDSLD VLNEWLNVLQ GMQIPFAIIP LLTLVSNEKI MGIFKIGKLM ERTVWTVAAL VIMINGYVML SFFLSEVNGL LFGFVACLGA SAYVAFLVYL
501: ISQRHNRAEL NGFTHLTN

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.