Factsheet for Zm00001d030846_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	92.05	95.77
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	82.33	86.14
TraesCS5D01G084900.1	Wheat	plasma membrane	82.86	85.74
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	82.86	85.74
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	82.86	85.74
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	82.69	85.56
GSMUA_Achr9P26850_001	Banana	plasma membrane	57.07	76.18
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	69.43	72.78
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	59.89	72.75
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	64.84	70.85
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	26.68	69.91
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	65.72	69.4
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	63.25	69.38
KRH52059	Soybean	cytosol, nucleus, plasma membrane	63.96	69.35
AT1G47240.1	Thale cress	plasma membrane	64.31	68.68
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	63.6	68.31
CDY17036	Canola	cytosol, nucleus, plasma membrane	63.6	68.31
CDY47594	Canola	cytosol, nucleus, plasma membrane	63.6	68.31
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	64.84	67.96
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	63.78	67.86
CDY17090	Canola	cytosol, peroxisome, plasma membrane	63.6	67.54
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	60.78	66.28
CDY06751	Canola	plasma membrane	47.88	64.68
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	58.3	63.71
CDY62556	Canola	plasma membrane	58.83	62.59
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	58.66	62.41
CDY64917	Canola	cytosol, plasma membrane, plastid	58.48	62.34
AT4G18790.1	Thale cress	plasma membrane	57.42	61.32
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	17.14	59.51
KRH47958	Soybean	cytosol, nucleus, plasma membrane	57.95	58.89
KRH06520	Soybean	cytosol, nucleus, plasma membrane	58.13	58.86
Solyc04g078240.1.1	Tomato	cytosol	13.78	48.45
Zm00001d014391_P008	Maize	plasma membrane	33.57	34.55
Zm00001d034473_P001	Maize	endoplasmic reticulum, extracellular, vacuole	4.59	32.91
Zm00001d015133_P001	Maize	cytosol, peroxisome, plasma membrane	30.74	31.3
Zm00001d005479_P001	Maize	plasma membrane	31.98	30.89
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	28.27	30.71
Zm00001d007397_P003	Maize	cytosol, peroxisome, plasma membrane	25.09	24.96
Zm00001d033625_P015	Maize	plasma membrane	15.37	18.28
Zm00001d013492_P001	Maize	plasma membrane	14.84	15.11
Zm00001d039341_P126	Maize	plasma membrane	17.31	7.54

Protein Annotations

MapMan:24.2.3.10	UniProt:A0A1D6KEM9	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221
InterPro:NRAMP_fam	ProteinID:ONM01601.1	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46
TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0008431AD0	EnsemblPlantsGene:Zm00001d030846	EnsemblPlants:Zm00001d030846_P001	EnsemblPlants:Zm00001d030846_T001
SEG:seg	:	:	:	:	:

Description

Metal transporter Nramp3

Coordinates

chr1:-:162956258..162960502

Molecular Weight (calculated)

61513.0 Da

IEP (calculated)

4.706

GRAVY (calculated)

0.493

Length

566 amino acids

Sequence
(BLAST)

001: MAATDDGAVD SASAAAAARA VEEARALLPA PAPDYDDEDL EERAYEAAEK VIVSISGGPD PEDVDGDGDG AELCSSSGSS PPPFSWRKLW LFTGPGFLMS
101: IAFLDPGNLE GDLQAGAVAG DTLLWLLMWA TAMGLLVQLL AARLGVATGR HLAELCRDEY PDWARRALWL MAEVAMVGAD IQEVIGSAIA IKILSRGYLP
201: LWAGVVITAL DWSVLSFCFF LDLFFHLPVL HANCFIFLSL ENYGVRKLEA VFALLITTMA VSFAWMFTDT KPNGKDLLIG ILVPKLSSRT IRQAVGVVGC
301: VIMPHNVFLH SALVQSRKID QNKEYQVREA LRYYSIESTI ALVVSFMINL FVTTVFAKGF YGSKEAGNIG LENAGQYLQE KFGGGFFPIL YIWGIGLLAA
401: GQSSTITGTY AGQFIMGGFL NLRLKKWVRA LITRSFAIVP TITVALFFDT SDSALDILNE WLNVLQSIQI PFALIPLITL VSKEQVMGVF KIGPNTQAVT
501: WTVATLLITI NGYLLMDFFS SEIRGPLSGS LLCVAVLIYA SFVLYLILRG TELSEKIAKA IRGSFS

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.