Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 3
- golgi 2
- mitochondrion 2
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P26850_001 | Banana | plasma membrane | 61.96 | 23.82 |
| GSMUA_Achr4P32750_001 | Banana | peroxisome, plasma membrane, vacuole | 61.35 | 21.46 |
| GSMUA_Achr6P07820_001 | Banana | cytosol, plasma membrane, vacuole | 56.44 | 20.77 |
| GSMUA_Achr3P18820_001 | Banana | cytosol, peroxisome, plasma membrane | 58.9 | 20.17 |
| Solyc04g078250.2.1 | Tomato | cytosol, nucleus, plasma membrane | 59.51 | 18.69 |
| Solyc02g092800.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 58.28 | 18.66 |
| Os12t0581600-01 | Rice | cytosol, nucleus, plasma membrane | 61.35 | 18.48 |
| EER92665 | Sorghum | cytosol, peroxisome, plasma membrane | 57.67 | 18.22 |
| TraesCS4D01G254100.1 | Wheat | cytosol, plasma membrane, vacuole | 57.67 | 18.11 |
| TraesCS4B01G254300.1 | Wheat | cytosol, plasma membrane, vacuole | 57.67 | 18.04 |
| TraesCS4A01G050500.1 | Wheat | cytosol, peroxisome, plasma membrane | 57.67 | 18.04 |
| Zm00001d048129_P004 | Maize | cytosol, peroxisome, plasma membrane | 57.06 | 18.02 |
| EES17269 | Sorghum | cytosol, peroxisome, plasma membrane | 60.12 | 18.01 |
| HORVU4Hr1G069320.1 | Barley | vacuole | 57.67 | 18.01 |
| TraesCS5D01G084900.1 | Wheat | plasma membrane | 60.12 | 17.92 |
| TraesCS5B01G078700.1 | Wheat | cytosol, plasma membrane, vacuole | 60.12 | 17.92 |
| TraesCS5A01G072200.1 | Wheat | cytosol, plasma membrane, vacuole | 60.12 | 17.92 |
| HORVU5Hr1G018850.2 | Barley | cytosol, nucleus, plasma membrane | 60.12 | 17.92 |
| Zm00001d033367_P001 | Maize | cytosol, nucleus, plasma membrane | 57.67 | 17.41 |
| KXG38042 | Sorghum | cytosol, nucleus, plasma membrane | 58.28 | 17.4 |
| Os03t0208500-01 | Rice | plasma membrane | 55.83 | 17.37 |
| TraesCS4D01G076500.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.44 | 17.36 |
| TraesCS4A01G237200.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.44 | 17.33 |
| TraesCS4B01G078000.1 | Wheat | cytosol, peroxisome, plasma membrane | 56.44 | 17.33 |
| Zm00001d030846_P001 | Maize | plasma membrane | 59.51 | 17.14 |
| HORVU4Hr1G013220.1 | Barley | mitochondrion, peroxisome, plasma membrane | 56.44 | 16.76 |
| Solyc11g018530.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 29.45 | 9.06 |
| Solyc03g116900.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 26.38 | 8.24 |
| Os03t0606600-00 | Rice | extracellular, mitochondrion, peroxisome | 6.13 | 4.59 |
| Os01t0733001-00 | Rice | endoplasmic reticulum, nucleus | 1.84 | 2.44 |
| Solyc09g005540.1.1 | Tomato | cytosol, nucleus, vacuole | 7.98 | 2.11 |
| Solyc09g007870.2.1 | Tomato | plastid | 15.34 | 1.9 |
| Solyc09g005490.1.1 | Tomato | extracellular | 0.0 | 0.0 |
| Solyc04g078240.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Os03t0607400-01 | Rice | cytosol, peroxisome, plasma membrane, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc04g078230.1.1 | EnsemblPlantsGene:Solyc04g078230.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0030001 | GO:GO:0046873 | InterPro:NRAMP_fam | PANTHER:PTHR11706 |
| PANTHER:PTHR11706:SF46 | PFAM:PF01566 | UniParc:UPI0002766A26 | UniProt:K4BUR0 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr4:-:63021305..63021853
Molecular Weight (calculated)
17943.3 Da
IEP (calculated)
8.297
GRAVY (calculated)
0.453
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTAVFAKGF YGTSRADSIG LVNAGQYLQE RYGGGVCPLL YIWGIGLLAA GQSSTMTGTY AGQFIMGGFL NLRMKKCISS VSEDTLDVLN EWLNVLQGMQ
101: IPFAIIPLLT LVSNEKIMGA FKIGKLIEVR DQYLYILIYN RNCFVNAPFS TMMILPMHST VTC
101: IPFAIIPLLT LVSNEKIMGA FKIGKLIEVR DQYLYILIYN RNCFVNAPFS TMMILPMHST VTC
001: MTGSTVSRQE NSPKRPNDSN GEFKRLLVPE TSQPEEDELH ESPPENQILN VEEDRDKTYD SVPPFSWAKL WKFTGPGFLM SIAFLDPGNI EGDLQAGAVA
101: GYSLLWLLLW ATLMGLLMQL LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL PIWVGVIITS FDCFLISYLE
201: KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA
301: LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT
401: MFVAIMFNTS EGSLDVLNEW LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA EVEGFLVGFL VFGGVVGYIS
501: FIIYLVSYRS SQSSSWSSLE MSERVVSTET
101: GYSLLWLLLW ATLMGLLMQL LSARIGVATG RHLAEICRSE YPSWARILLW FMAEVALIGA DIQEVIGSAI ALQILTRGFL PIWVGVIITS FDCFLISYLE
201: KCGMRKLEGL FAVLIATMAL SFAWMFNETK PSVEELFIGI IIPKLGSKTI REAVGVVGCV ITPHNVFLHS ALVQSRKTDP KEINRVQEAL NYYTIESSAA
301: LFVSFMINLF VTAVFAKGFY GTKQADSIGL VNAGYYLQEK YGGGVFPILY IWGIGLLAAG QSSTITGTYA GQFIMEGFLD LQMEQWLSAF ITRSFAIVPT
401: MFVAIMFNTS EGSLDVLNEW LNILQSMQIP FAVIPLLTMV SNEHIMGVFK IGPSLEKLAW TVAVFVMMIN GYLLLDFFMA EVEGFLVGFL VFGGVVGYIS
501: FIIYLVSYRS SQSSSWSSLE MSERVVSTET
Arabidopsis Description
NRAMP5Metal transporter Nramp5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN36]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.