Factsheet for GSMUA_Achr3P18820_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	70.38	75.62
GSMUA_Achr9P26850_001	Banana	plasma membrane	57.35	64.39
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	63.03	64.38
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	68.28	62.98
HORVU4Hr1G069320.1	Barley	vacuole	68.91	62.84
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	68.49	62.81
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	67.86	62.6
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	68.49	62.57
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	68.28	62.38
Os03t0208500-01	Rice	plasma membrane	68.49	62.21
CDY06751	Canola	plasma membrane	53.57	60.86
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	67.44	59.89
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	20.17	58.9
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	63.87	58.69
KRH52059	Soybean	cytosol, nucleus, plasma membrane	63.66	58.05
CDY47594	Canola	cytosol, nucleus, plasma membrane	63.66	57.5
CDY17036	Canola	cytosol, nucleus, plasma membrane	63.45	57.31
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	64.92	57.22
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	63.24	57.12
AT1G47240.1	Thale cress	plasma membrane	63.24	56.79
CDY17090	Canola	cytosol, peroxisome, plasma membrane	63.45	56.66
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	62.6	56.02
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	60.5	55.49
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	59.03	54.25
CDY64917	Canola	cytosol, plasma membrane, plastid	57.14	51.22
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	56.93	50.94
CDY62556	Canola	plasma membrane	56.93	50.94
AT4G18790.1	Thale cress	plasma membrane	55.67	50.0
KRH47958	Soybean	cytosol, nucleus, plasma membrane	57.98	49.55
KRH06520	Soybean	cytosol, nucleus, plasma membrane	57.98	49.37
Solyc04g078240.1.1	Tomato	cytosol	16.6	49.07
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	32.56	35.8
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	36.13	31.68
GSMUA_Achr11P...	Banana	cytosol	33.61	30.77
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	34.45	29.6
GSMUA_Achr9P10350_001	Banana	plasma membrane	17.02	6.71
GSMUA_Achr6P31160_001	Banana	plasma membrane	17.02	6.37
GSMUA_Achr7P01280_001	Banana	plasma membrane	17.44	5.61

Protein Annotations

EnsemblPlants:GSMUA_Achr3P18820_001	EnsemblPlants:GSMUA_Achr3T18820_001	EnsemblPlantsGene:GSMUA_Achr3G18820_001	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873
InterPro:NRAMP_fam	PANTHER:PTHR11706	PANTHER:PTHR11706:SF51	PFAM:PF01566	PRINTS:PR00447	SEG:seg
TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI0002954F4F	UniProt:M0SFU8	MapMan:24.2.3.10	:

Description

Metal transporter Nramp2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G18820_001]

Coordinates

chr3:+:20199723..20203746

Molecular Weight (calculated)

52113.4 Da

IEP (calculated)

6.256

GRAVY (calculated)

0.620

Length

476 amino acids

Sequence
(BLAST)

001: MDSPLRPEAA PLLQTRPGSN DEAERAYDAD EKVVISVSED GRSMEDDGSL PPFSWRKLWR LGVATGRHLA ELCREEYPRW ATIALWIMAE LALIGADIQE
101: VIGSAIAIKI LSGGVIPLWA GVVITASDCF IFLFLENYGV RKLEAFFGVL IATMAVSFAI MFGEAKPSGK EFLIGVLVPK LSSSTIRQAV GVVGCIIMPH
201: NVFLHSALVQ SRKIDNSKTS HVREAMSYYS IESTVALLIS FFINVCVTTV FAKGFYGTEV ASSIGLENAG QFLQEKYGGK LFPILYIWGI GLLASGQSST
301: ITGTYAGQFI MGGFLNLRLK KWARSLITRS FAMLPTIIVA LLFDTDDSAM DILNESLNVL QSIQIPFALI PLLALVSKEQ LMGAFRIGPI MKVVTWIMVG
401: FLIIINGYLL LDFFTAEVHG LLISCLLSSA LAIYVIFIAY LVLRHSAFCT SGTLAINKVI DSTLTCQLYC IPVWLI

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.