Factsheet for TraesCS4B01G254300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, plasma membrane, vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	98.66	99.04
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	97.89	97.89
HORVU4Hr1G069320.1	Barley	vacuole	97.5	97.32
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	89.44	90.31
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	88.48	89.34
Os03t0208500-01	Rice	plasma membrane	89.64	89.12
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	60.08	70.65
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	62.57	68.49
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.79	64.93
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	67.56	64.35
CDY17036	Canola	cytosol, nucleus, plasma membrane	65.07	64.33
AT1G47240.1	Thale cress	plasma membrane	65.26	64.15
CDY47594	Canola	cytosol, nucleus, plasma membrane	64.88	64.14
Bra040791.1-P	Field mustard	cytosol, nucleus, plasma membrane	64.88	64.14
Bra040711.1-P	Field mustard	cytosol, peroxisome, plasma membrane	65.26	63.91
CDY17090	Canola	cytosol, peroxisome, plasma membrane	64.88	63.41
KRH61379	Soybean	cytosol, peroxisome, plasma membrane	62.76	63.13
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	63.92	62.71
KRH52059	Soybean	cytosol, nucleus, plasma membrane	62.76	62.64
CDY06751	Canola	plasma membrane	49.9	62.05
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	63.72	61.48
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	61.04	61.39
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	60.84	61.08
AT4G18790.1	Thale cress	plasma membrane	58.93	57.92
CDY64917	Canola	cytosol, plasma membrane, plastid	58.93	57.82
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	58.93	57.71
CDY62556	Canola	plasma membrane	58.93	57.71
Solyc04g078230.1.1	Tomato	cytosol, extracellular, plastid	18.04	57.67
KRH06520	Soybean	cytosol, nucleus, plasma membrane	58.16	54.2
KRH47958	Soybean	cytosol, nucleus, plasma membrane	57.77	54.04
Solyc04g078240.1.1	Tomato	cytosol	16.7	54.04
TraesCS7B01G364800.1	Wheat	plasma membrane	37.04	35.22
TraesCS4B01G300600.1	Wheat	plasma membrane	35.51	34.26
TraesCS7B01G227900.1	Wheat	plasma membrane	34.36	34.1
TraesCS3B01G230400.1	Wheat	cytosol, peroxisome, plasma membrane	28.79	27.62
TraesCS4B01G381200.1	Wheat	plasma membrane	16.7	17.86
TraesCS5B01G158500.1	Wheat	plasma membrane	19.0	7.99
TraesCS4B01G038100.1	Wheat	plasma membrane	18.23	7.86
TraesCS2B01G133000.1	Wheat	plasma membrane	17.66	7.67

Protein Annotations

EnsemblPlants:TraesCS4B01G254300.1	EnsemblPlantsGene:TraesCS4B01G254300	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam
PANTHER:PTHR11706	PANTHER:PTHR11706:SF51	PFAM:PF01566	PRINTS:PR00447	SEG:seg	TIGRFAMs:TIGR01197
TMHMM:TMhelix	MapMan:24.2.3.10	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:519606232..519609269

Molecular Weight (calculated)

56918.9 Da

IEP (calculated)

6.525

GRAVY (calculated)

0.504

Length

521 amino acids

Sequence
(BLAST)

001: MASRDLAESL LPGGGASASA SSSHDEYEER AYDSDDKVSI SISDSEPDDD GDPGAPRARP AFSWRKLWRF TGPGFLMCIG FLDPGNLEGD LQAGAAAGYQ
101: LLWLLLWATV MGALVQLLSA RLGVVTGKHL AELCREEYPP WATRALWVMT ELALVGADIQ EVIGSAIAIK ILSGGIVPLW GGVVITAFDC FIFLFLENYG
201: VRKLEAFFGV LIATMAISFA IMFGETKPSG KELLIGLVVP KLSSKTIKQA VGIVGCIIMP HNVFLHSALV QSRKIDTKKK SRVQEAVYYY NIESILALIV
301: SFFINICVTT VFAKGFYGSD KADNIGLENA GQYLQEKYGT ALFPVLYIWA IGLLASGQSS TITGTYAGQF VMGGFLNLRL KKWLRAVITR SFAIIPTMIV
401: ALFFDTEDPT MDVLNESLNV LQSIQIPFAL IPLITLVSSE QLMGSFLVGP ITKVISWIVT IFLMLINGYL ILSFYTNEVR GAVVRSSLCV VLAVYLAFIM
501: YLILRNTTLY SRLRSSVSKS S

Best Arabidopsis Sequence Match ( AT5G67330.1 )
(BLAST)

001: MSETDRERPL LASEERAYEE TEKVLIVGID EEEDADYDDD PGNSPKFSWK KLWLFTGPGF LMSIAFLDPG NLESDLQAGA IAGYSLIWLL MWATAIGLLI
101: QLLSARLGVA TGRHLAELCR EEYPTWARMV LWIMAEIALI GADIQEVIGS AIAIKILSNG LVPLWAGVVI TALDCFIFLF LENYGIRKLE AVFAILIATM
201: ALAFAWMFGQ TKPSGTELLV GALVPKLSSR TIKQAVGIVG CIIMPHNVFL HSALVQSREV DPKKRFRVKE ALKYYSIEST GALAVSFIIN VFVTTVFAKS
301: FYGTEIADTI GLANAGQYLQ DKYGGGFFPI LYIWAIGVLA AGQSSTITGT YAGQFIMGGF LNLKMKKWVR ALITRSCAII PTMIVALVFD SSDSMLDELN
401: EWLNVLQSVQ IPFAVIPLLC LVSNEQIMGS FKIQPLVQTI SWIVAALVIA INGYLMVDFF SGAATNLILL VPVIIFAIAY VVFVLYLISR GLTYTPWQLV
501: ASSHKEPQRD DE

Arabidopsis Description

NRAMP4Metal transporter Nramp4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN18]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.