Factsheet for VIT_18s0001g09490.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055473	Potato	cytosol, peroxisome, plasma membrane	77.61	77.04
VIT_07s0129g00620.t01	Wine grape	plasma membrane	74.25	76.54
GSMUA_Achr9P26850_001	Banana	plasma membrane	58.4	73.82
Solyc04g078250.2.1	Tomato	cytosol, nucleus, plasma membrane	69.4	71.68
PGSC0003DMT400059923	Potato	cytosol, peroxisome, plasma membrane	67.54	69.88
Bra012577.1-P	Field mustard	cytosol, plasma membrane, plastid	68.84	69.36
CDY64917	Canola	cytosol, plasma membrane, plastid	68.66	69.3
EES17269	Sorghum	cytosol, peroxisome, plasma membrane	70.34	69.3
CDY62556	Canola	plasma membrane	68.66	69.17
TraesCS5D01G084900.1	Wheat	plasma membrane	70.34	68.92
Os12t0581600-01	Rice	cytosol, nucleus, plasma membrane	69.4	68.76
TraesCS5B01G078700.1	Wheat	cytosol, plasma membrane, vacuole	70.15	68.74
TraesCS5A01G072200.1	Wheat	cytosol, plasma membrane, vacuole	70.15	68.74
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	56.72	68.62
AT4G18790.1	Thale cress	plasma membrane	67.72	68.49
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	59.51	68.45
HORVU5Hr1G018850.2	Barley	cytosol, nucleus, plasma membrane	69.78	68.37
EER92665	Sorghum	cytosol, peroxisome, plasma membrane	65.49	68.02
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	64.93	67.44
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	59.89	67.44
KRH06520	Soybean	cytosol, nucleus, plasma membrane	69.78	66.91
TraesCS4D01G254100.1	Wheat	cytosol, plasma membrane, vacuole	64.74	66.86
HORVU4Hr1G069320.1	Barley	vacuole	65.11	66.86
TraesCS4B01G254300.1	Wheat	cytosol, plasma membrane, vacuole	64.93	66.79
KRH47958	Soybean	cytosol, nucleus, plasma membrane	69.03	66.43
TraesCS4A01G050500.1	Wheat	cytosol, peroxisome, plasma membrane	64.55	66.41
Os03t0208500-01	Rice	plasma membrane	64.74	66.22
Zm00001d030846_P001	Maize	plasma membrane	69.4	65.72
TraesCS4D01G076500.1	Wheat	cytosol, peroxisome, plasma membrane	64.74	65.47
TraesCS4A01G237200.1	Wheat	cytosol, peroxisome, plasma membrane	64.55	65.16
TraesCS4B01G078000.1	Wheat	cytosol, peroxisome, plasma membrane	64.37	64.97
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	63.62	63.15
HORVU4Hr1G013220.1	Barley	mitochondrion, peroxisome, plasma membrane	64.37	62.84
KXG38042	Sorghum	cytosol, nucleus, plasma membrane	63.81	62.64
Os03t0606600-00	Rice	extracellular, mitochondrion, peroxisome	23.32	57.34
Os03t0607400-01	Rice	cytosol, peroxisome, plasma membrane, plastid	22.01	54.63
Os01t0733001-00	Rice	endoplasmic reticulum, nucleus	10.82	47.15
VIT_18s0001g02120.t01	Wine grape	plasma membrane	37.13	36.72
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	34.14	35.88
VIT_09s0070g00210.t01	Wine grape	plastid	36.01	35.67
VIT_18s0001g02140.t01	Wine grape	plasma membrane	32.28	35.02
VIT_18s0001g02130.t01	Wine grape	plastid	11.57	30.54
VIT_08s0040g01730.t01	Wine grape	plasma membrane	20.71	8.42

Protein Annotations

EntrezGene:100262579	wikigene:100262579	MapMan:24.2.3.10	ProteinID:CCB45776	ProteinID:CCB45776.1	UniProt:F6GZP4
EMBL:FN595227	GO:GO:0003674	GO:GO:0005215	GO:GO:0005384	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0007275
GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0010015	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016049	GO:GO:0030001	GO:GO:0030154	GO:GO:0040007	GO:GO:0046873
GO:GO:0048767	GO:GO:0051512	GO:GO:0071287	GO:GO:0071421	EntrezGene:LOC100262579	wikigene:LOC100262579
HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF46
TIGR:TC67621	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI000198533E	ArrayExpress:VIT_18s0001g09490	EnsemblPlantsGene:VIT_18s0001g09490
EnsemblPlants:VIT_18s0001g09490.t01	unigene:Vvi.1936	RefSeq:XP_002285122	RefSeq:XP_002285122.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:7935682..7940534

Molecular Weight (calculated)

58594.1 Da

IEP (calculated)

5.516

GRAVY (calculated)

0.521

Length

536 amino acids

Sequence
(BLAST)

001: MMTPEPSQQE PPNGDGKDEE ANRLLPSKSP SSLSPSSDEE EVAYESREKI SIVDLEGETL ESLDASATPP FSWKKLWLFT GPGFLMSIAF LDPGNLEGDL
101: QAGAIAGYSL LWLLMWATVM GLLIQLLSAR VGVATGRHLA ELCREEYPTW AGRLLWFMAE LALIGADIQE VIGSAIAIKI LSRGFLPLWA GVVITASDCF
201: IFLFLENYGV RKLEAVFAVF IATMGLSFAW MFGDAKPSGR ELLIGVLVPK LSSKTIRQAV GVVGCVIMPH NVFLHSALVQ SRKIDPHRKG RVQEALNYYS
301: IESTVALLIS FMINLFVTTV FAKGFYGTKQ ADGIGLVNAG QYLEEKYGGG VFPILYVWGI GLLAAGQSST ITGTYAGQFI MGGFLNLRLK KWLRALITRS
401: FAIVPTMIVA LVFNRSEASL DVLNEWLNVL QSMQIPFALI PLLTLVSKEQ VMGVFKVGPL LERVAWTVAA LVIVINGYLL LDFFMAEVDG VLFGFLVCAG
501: TALYVAFIFY LVSHGGVLSS TWFSLVTSKR FPFIGS

Best Arabidopsis Sequence Match ( AT1G47240.1 )
(BLAST)

001: MENDVKENLE EEEDRLLPPP PPSQSLPSTD SESEAAFETN EKILIVDFES PDDPTTGDTP PPFSWRKLWL FTGPGFLMSI AFLDPGNLEG DLQAGAIAGY
101: SLLWLLMWAT AMGLLIQMLS ARVGVATGRH LAELCRDEYP TWARYVLWSM AELALIGADI QEVIGSAIAI QILSRGFLPL WAGVVITASD CFLFLFLENY
201: GVRKLEAVFA VLIATMGLSF AWMFGETKPS GKELMIGILL PRLSSKTIRQ AVGVVGCVIM PHNVFLHSAL VQSRKIDPKR KSRVQEALNY YLIESSVALF
301: ISFMINLFVT TVFAKGFYGT EKANNIGLVN AGQYLQEKFG GGLLPILYIW GIGLLAAGQS STITGTYAGQ FIMGGFLNLR LKKWMRAVIT RSCAIVPTMI
401: VAIVFNTSEA SLDVLNEWLN VLQSVQIPFA LLPLLTLVSK EEIMGDFKIG PILQRIAWTV AALVMIINGY LLLDFFVSEV DGFLFGVTVC VWTTAYIAFI
501: VYLISHSNFF PSPWSSSSIE LPKRVSVSNS

Arabidopsis Description

NRAMP2Metal transporter Nramp2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.