Factsheet for VIT_18s0001g02140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02120.t01	Wine grape	plasma membrane	80.36	73.25
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	58.91	67.21
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	67.21	63.72
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	67.0	61.87
TraesCS4D01G299400.1	Wheat	plasma membrane	66.6	61.15
TraesCS4B01G300600.1	Wheat	plasma membrane	66.6	60.93
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	66.19	60.78
TraesCS4A01G004400.1	Wheat	plasma membrane	66.4	60.74
HORVU4Hr1G077510.1	Barley	plasma membrane	66.6	60.7
GSMUA_Achr11P...	Banana	cytosol	63.56	60.38
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	66.8	59.57
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	61.94	59.42
Os07t0258400-01	Rice	plasma membrane	61.54	58.69
TraesCS7A01G327300.1	Wheat	plasma membrane	62.15	58.48
TraesCS7B01G227900.1	Wheat	plasma membrane	62.15	58.48
TraesCS7D01G324000.1	Wheat	plasma membrane	61.94	58.29
EER96161	Sorghum	cytosol, plasma membrane, vacuole	60.32	56.76
VIT_18s0001g02130.t01	Wine grape	plastid	22.67	55.17
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	56.07	54.31
VIT_09s0070g00210.t01	Wine grape	plastid	56.68	51.76
Zm00001d005479_P001	Maize	plasma membrane	60.12	50.68
VIT_07s0129g00620.t01	Wine grape	plasma membrane	36.23	34.42
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	35.02	32.28
VIT_08s0040g01730.t01	Wine grape	plasma membrane	23.08	8.65

Protein Annotations

MapMan:24.2.3.10	ProteinID:CCB45468	ProteinID:CCB45468.1	UniProt:F6H0J6	EMBL:FN595227	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TMHMM:TMhelix	UniParc:UPI0002109D33	ArrayExpress:VIT_18s0001g02140	EnsemblPlantsGene:VIT_18s0001g02140
EnsemblPlants:VIT_18s0001g02140.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:2521402..2529629

Molecular Weight (calculated)

54199.2 Da

IEP (calculated)

9.466

GRAVY (calculated)

0.533

Length

494 amino acids

Sequence
(BLAST)

001: MLKESNQIFI SNKPGWRNFL AFVGPGFLVS LAYLDPGNLE TDLQAGSNHG YELLWVVLIG LIFALVIQSL AANLGVITGT AFALNILFKV PVWAGVLFTG
101: LSTLLLLGLQ RYGVRKLEML IAGLVFIMAG CFFAEMSYVK PPASRVIKGM LIPKLKGSTA TTDAIALFGA LVMPHNLFLH SALVLSRKVP NSVRGVNEAC
201: RYFLIESGMA LMVAFCINVA VVSVSGTICS VNNLSRENMD QCSDLNLNSA SFLLKNVLGG SSKVVYAIAL FASGQSSTIT GTYAGQYIMQ GFLNLKMKRW
301: LRNLMTRCIA ITPSLIVSII SGSAGAGRLI IIASMILSFE LPFALIPLLK FSSSSTKMGP HKNSIYVIVF SWILGFGLMG INIYYLATGF VNWLLHNDLP
401: KVGNVFIGII VFPLMAVYVL AVLYLTFRKD TVVTFIEAEK DEHSARTHVE KKLEAEKYDQ SARTHVEKKL DNSNHTFELS HLHREDLIDI HLPN

Best Arabidopsis Sequence Match ( AT1G80830.2 )
(BLAST)

001: MAATGSGRSQ FISSSGGNRS FSNSPLIENS DSNQIIVSEK KSWKNFFAYL GPGFLVSIAY IDPGNFETDL QAGAHYKYEL LWIILVASCA ALVIQSLAAN
101: LGVVTGKHLA EQCRAEYSKV PNFMLWVVAE IAVVACDIPE VIGTAFALNM LFSIPVWIGV LLTGLSTLIL LALQKYGVRK LEFLIAFLVF TIAICFFVEL
201: HYSKPDPGEV LHGLFVPQLK GNGATGLAIS LLGAMVMPHN LFLHSALVLS RKIPRSASGI KEACRFYLIE SGLALMVAFL INVSVISVSG AVCNAPNLSP
301: EDRANCEDLD LNKASFLLRN VVGKWSSKLF AIALLASGQS STITGTYAGQ YVMQGFLDLR LEPWLRNLLT RCLAIIPSLI VALIGGSAGA GKLIIIASMI
401: LSFELPFALV PLLKFTSCKT KMGSHVNPMA ITALTWVIGG LIMGINIYYL VSSFIKLLIH SHMKLILVVF CGILGFAGIA LYLAAIAYLV FRKNRVATSL
501: LISRDSQNVE TLPRQDIVNM QLPCRVSTSD VD

Arabidopsis Description

NRAMP1Metal transporter Nramp1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.