Factsheet for Zm00001d019327_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	90.79	88.41
HORVU4Hr1G077510.1	Barley	plasma membrane	84.45	81.18
TraesCS4A01G004400.1	Wheat	plasma membrane	83.88	80.93
TraesCS4B01G300600.1	Wheat	plasma membrane	83.69	80.74
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	83.3	80.67
TraesCS4D01G299400.1	Wheat	plasma membrane	83.3	80.67
Zm00001d034473_P001	Maize	endoplasmic reticulum, extracellular, vacuole	11.32	74.68
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	58.54	70.44
VIT_18s0001g02140.t01	Wine grape	plasma membrane	63.72	67.21
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	68.14	66.98
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	67.95	66.79
KRH53274	Soybean	plastid	69.1	66.18
VIT_18s0001g02120.t01	Wine grape	plasma membrane	67.95	65.31
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	68.33	64.26
GSMUA_Achr11P...	Banana	cytosol	63.72	63.85
Zm00001d005479_P001	Maize	plasma membrane	66.99	59.56
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	52.59	53.73
Zm00001d014391_P008	Maize	plasma membrane	56.62	53.64
Zm00001d015133_P001	Maize	cytosol, peroxisome, plasma membrane	54.89	51.44
VIT_18s0001g02130.t01	Wine grape	plastid	18.43	47.29
Zm00001d007397_P003	Maize	cytosol, peroxisome, plasma membrane	46.07	42.18
Zm00001d048129_P004	Maize	cytosol, peroxisome, plasma membrane	30.9	31.2
Zm00001d033367_P001	Maize	cytosol, nucleus, plasma membrane	30.9	29.81
Zm00001d030846_P001	Maize	plasma membrane	30.71	28.27
Zm00001d033625_P015	Maize	plasma membrane	17.27	18.91
Zm00001d013492_P001	Maize	plasma membrane	18.04	16.91
Zm00001d039341_P126	Maize	plasma membrane	20.35	8.16

Protein Annotations

MapMan:24.2.3.10	UniProt:A0A1D6HWW3	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	HAMAP:MF_00221
InterPro:NRAMP_fam	ProteinID:ONM52708.1	PFAM:PF01566	PRINTS:PR00447	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38
TMHMM:TMhelix	UniParc:UPI00084330FD	EnsemblPlantsGene:Zm00001d019327	EnsemblPlants:Zm00001d019327_P001	EnsemblPlants:Zm00001d019327_T001	SEG:seg

Description

Metal transporter Nramp6

Coordinates

chr7:-:27984224..27988645

Molecular Weight (calculated)

56107.1 Da

IEP (calculated)

8.438

GRAVY (calculated)

0.578

Length

521 amino acids

Sequence
(BLAST)

001: MEIEREAPGS EKARSWRANA AAAAAAQAQQ VSKTTKPDGG DQPMKEPAWK RFLAHVGPGF MVSLAYLDPG NFFSETETVE TDLQAGANHR YELLWVILIG
101: LIFALVIQSL AANLGVVTVI GTAFAFNLLF HIPVWVGVLI TGSSTLLLLG LQRYGVRKLE FLISMLVFVM AACFFGELSF VKPPAVDVVK GLFIPRLKGD
201: GATADAIALL GALVMPHNLF LHSALVLSRK TPSSVRGIKD ACRFFLYESG FALFVALLIN IAVISVSGTV CFSGNLSPED AGKCSDLSLD SSSFLLKNVL
301: GRSSSIVYGV ALLASGQSST ITGTYSGQYI MQGFLDIRMK KWLRNLMTRC IAIAPSLVVS IIGGSSGAGR LIIIASMILS FELPFALIPL LKFSSSSSKM
401: GPHKNSIYII VFSWLLGLMI IGINMYFLST SFVGWLVHNS LPKYANVLVG LLVFPLMLVY VVAVIYLTFR KDTVVTFVAD SAQLAVVDAE KANKAAAAAG
501: DDDDDRPVPF RQDLADIPLP E

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.