Factsheet for GSMUA_Achr5P25950_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	90.53	75.38
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	82.91	64.8
Solyc11g018530.1.1	Tomato	cytosol, peroxisome, plasma membrane	78.06	63.77
PGSC0003DMT400023921	Potato	cytosol, peroxisome, plasma membrane	77.83	63.58
VIT_18s0001g02120.t01	Wine grape	plasma membrane	79.21	63.28
KRH53274	Soybean	plastid	79.21	63.05
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	77.6	62.45
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	76.91	62.24
TraesCS4B01G300600.1	Wheat	plasma membrane	77.6	62.22
TraesCS4D01G299400.1	Wheat	plasma membrane	77.14	62.08
TraesCS4A01G004400.1	Wheat	plasma membrane	77.14	61.85
HORVU4Hr1G077510.1	Barley	plasma membrane	77.37	61.81
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	70.21	59.03
VIT_18s0001g02140.t01	Wine grape	plasma membrane	67.21	58.91
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	70.44	58.54
TraesCS7D01G324000.1	Wheat	plasma membrane	70.9	58.48
Os07t0258400-01	Rice	plasma membrane	69.75	58.3
TraesCS7A01G327300.1	Wheat	plasma membrane	70.21	57.9
TraesCS7B01G227900.1	Wheat	plasma membrane	69.98	57.71
EER96161	Sorghum	cytosol, plasma membrane, vacuole	69.75	57.52
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	63.51	53.92
Zm00001d005479_P001	Maize	plasma membrane	69.05	51.02
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	62.12	49.54
VIT_18s0001g02130.t01	Wine grape	plastid	23.09	49.26
GSMUA_Achr6P07820_001	Banana	cytosol, plasma membrane, vacuole	37.88	37.02
GSMUA_Achr9P26850_001	Banana	plasma membrane	33.49	34.2
GSMUA_Achr4P32750_001	Banana	peroxisome, plasma membrane, vacuole	36.03	33.48
GSMUA_Achr3P18820_001	Banana	cytosol, peroxisome, plasma membrane	35.8	32.56
GSMUA_Achr9P10350_001	Banana	plasma membrane	24.25	8.7
GSMUA_Achr6P31160_001	Banana	plasma membrane	24.02	8.18
GSMUA_Achr7P01280_001	Banana	plasma membrane	23.56	6.89

Protein Annotations

MapMan:24.2.3.10	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	EnsemblPlantsGene:GSMUA_Achr5G25950_001	EnsemblPlants:GSMUA_Achr5P25950_001
EnsemblPlants:GSMUA_Achr5T25950_001	UniProt:M0T1S0	HAMAP:MF_00221	InterPro:NRAMP_fam	PFAM:PF01566	PRINTS:PR00447
PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	TIGRFAMs:TIGR01197	TMHMM:TMhelix	UniParc:UPI00029613DE	SEG:seg

Description

Metal transporter Nramp6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G25950_001]

Coordinates

chr5:+:26919553..26922582

Molecular Weight (calculated)

46583.8 Da

IEP (calculated)

8.042

GRAVY (calculated)

0.646

Length

433 amino acids

Sequence
(BLAST)

001: MRSNSMAVET DLQAGANHKY ELLWVILIGL VFALIIQSLA ANLGVTTGKH LAELCKAEYP RFVKYCLWVV AELAVIAADI PEVIGTAFAL NILFHIPLWA
101: GVLITGLSTL LLLGLQRYGV RKLELLISIL VFIMAACYFG ELSYVKPPAS EVMKGLFVPK LNGKSATSDA IALLGALVMP HNLFLHSALV LSRKTPPSVK
201: GINDACRYFL VESGFALFVA LLINIAVVSV SGTVCAADNL SSDDSDRCSD LTLNSASFLL KNVLGKSSSI VYGIALLASG QSSTITGTYA GQYIMQGFLD
301: IKMRMWLQNL MTRCVAIGPS LIVSIIGGSA GAGKLIIIAS MILSFELPFA LIPLLKFSSS QTKMGPHKNS IYVIVVSWVL GFGVIGINIY FLSTSFSDSS
401: QIEMENGMRR SDGNRGTEVV PYRVDLADIP LPD

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.