Factsheet for VIT_18s0001g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
mitochondrion 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02120.t01	Wine grape	plasma membrane	63.05	23.62
GSMUA_Achr5P25950_001	Banana	cytosol, nucleus, plasma membrane	49.26	23.09
VIT_18s0001g02140.t01	Wine grape	plasma membrane	55.17	22.67
KRH53274	Soybean	plastid	55.17	20.59
GSMUA_Achr11P...	Banana	cytosol	50.25	19.62
TraesCS4D01G299400.1	Wheat	plasma membrane	49.75	18.77
TraesCS4A01G004400.1	Wheat	plasma membrane	49.75	18.7
TraesCS4B01G300600.1	Wheat	plasma membrane	49.75	18.7
OQU88782	Sorghum	cytosol, peroxisome, plasma membrane	49.26	18.69
HORVU4Hr1G077510.1	Barley	plasma membrane	49.75	18.63
HORVU7Hr1G078330.2	Barley	peroxisome, plasma membrane	46.8	18.45
Zm00001d019327_P001	Maize	cytosol, peroxisome, plasma membrane	47.29	18.43
TraesCS7B01G227900.1	Wheat	plasma membrane	47.29	18.29
TraesCS7A01G327300.1	Wheat	plasma membrane	46.8	18.1
TraesCS7D01G324000.1	Wheat	plasma membrane	46.8	18.1
VIT_00s0218g00100.t01	Wine grape	endoplasmic reticulum, plasma membrane	45.32	18.04
Os07t0257200-01	Rice	cytosol, peroxisome, plasma membrane	47.29	17.84
Os07t0258400-01	Rice	plasma membrane	44.34	17.37
EER96161	Sorghum	cytosol, plasma membrane, vacuole	44.83	17.33
VIT_09s0070g00210.t01	Wine grape	plastid	45.81	17.19
GSMUA_AchrUn_...	Banana	cytosol, peroxisome, plasma membrane	46.8	17.15
Zm00001d005479_P001	Maize	plasma membrane	44.34	15.36
VIT_07s0129g00620.t01	Wine grape	plasma membrane	31.53	12.31
VIT_18s0001g09490.t01	Wine grape	cytosol, peroxisome, plasma membrane	30.54	11.57
VIT_08s0040g01730.t01	Wine grape	plasma membrane	19.21	2.96

Protein Annotations

ArrayExpress:VIT_18s0001g02130	EMBL:FN595227	EnsemblPlants:VIT_18s0001g02130.t01	EnsemblPlantsGene:VIT_18s0001g02130	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001
GO:GO:0046873	InterPro:NRAMP_fam	PANTHER:PTHR11706	PANTHER:PTHR11706:SF38	PFAM:PF01566	ProteinID:CBI18986
ProteinID:CBI18986.3	TMHMM:TMhelix	UniParc:UPI00015C7BB5	UniProt:E0CR32	MapMan:35.1	:

Description

No Description!

Coordinates

chr18:+:2519567..2521025

Molecular Weight (calculated)

22576.6 Da

IEP (calculated)

8.415

GRAVY (calculated)

0.276

Length

203 amino acids

Sequence
(BLAST)

001: MGWGSLHWLQ HSPASWPAKL WGEEVRNVDS SAGIHNGWLF PWRNELCEAS SLRCVIKGMF IPKLKGQCAT GDAIAILGAL VMPHNLFLHS ALVLSRKMPN
101: SVRGINEACR YFLIESVLVL FVAFLINVAV VSMSDTVCSA DNLSKENLDQ CNDLNLNSAS FLLKNVLGGS SKVVYAIVLC LRPKFHHHRH LCWTIYHAGF
201: LGY

Best Arabidopsis Sequence Match ( AT1G15960.1 )
(BLAST)

001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN

Arabidopsis Description

NRAMP6Metal transporter Nramp6 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9N8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.